Variant report

Variant	rs74124633
Chromosome Location	chr1:161059343-161059344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161007165..161010190-chr1:161058502..161060475,3	MCF-7	breast:
2	chr1:160989498..160991645-chr1:161056781..161059472,2	MCF-7	breast:
3	chr1:161056990..161060548-chr1:161087703..161089800,3	MCF-7	breast:
4	chr1:161058303..161059850-chr1:161088511..161090425,2	MCF-7	breast:
5	chr1:161014200..161017793-chr1:161057956..161063190,6	MCF-7	breast:
6	chr1:161045029..161046710-chr1:161057509..161060408,2	K562	blood:
7	chr1:161043647..161044411-chr1:161058609..161059385,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158793	Chromatin interaction
ENSG00000158769	Chromatin interaction
ENSG00000215845	Chromatin interaction
ENSG00000143217	Chromatin interaction
ENSG00000270149	Chromatin interaction
ENSG00000143256	Chromatin interaction
ENSG00000158773	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55675252	1.00[AMR][1000 genomes]
rs74124643	1.00[AMR][1000 genomes]
rs74124646	1.00[AMR][1000 genomes]
rs74124647	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3351730	chr1:161055728-161059526	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161039600-161066800	Weak transcription	Right Atrium	heart
2	chr1:161053600-161063600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:161055200-161064600	Weak transcription	Fetal Lung	lung
4	chr1:161055400-161061400	Weak transcription	HSMMtube	muscle
5	chr1:161055400-161062000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:161055400-161062400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:161056800-161059600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:161057000-161062400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:161057200-161059800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:161057600-161059400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:161057600-161059800	Enhancers	HMEC	breast
12	chr1:161057800-161059600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:161057800-161060000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr1:161057800-161060200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr1:161058200-161059400	Bivalent/Poised TSS	Fetal Stomach	stomach
16	chr1:161058200-161059400	Flanking Active TSS	NHEK	skin
17	chr1:161058200-161059600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:161058400-161059400	Active TSS	Stomach Mucosa	stomach
19	chr1:161058400-161059800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:161058400-161059800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr1:161058400-161059800	Flanking Active TSS	Placenta	Placenta
22	chr1:161058600-161059400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:161058600-161059400	Active TSS	Colonic Mucosa	Colon
24	chr1:161058600-161059400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr1:161058600-161059600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:161058800-161059400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr1:161058800-161059400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr1:161058800-161059400	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr1:161058800-161059400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr1:161058800-161059600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr1:161058800-161059800	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr1:161058800-161060000	Enhancers	Fetal Intestine Large	intestine
33	chr1:161058800-161061400	Weak transcription	HSMM	muscle
34	chr1:161058800-161062000	Weak transcription	NH-A	brain
35	chr1:161058800-161062200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:161058800-161062200	Weak transcription	A549	lung
37	chr1:161058800-161062200	Weak transcription	Hela-S3	cervix
38	chr1:161058800-161062400	Weak transcription	NHLF	lung
39	chr1:161059000-161059400	Flanking Active TSS	Fetal Intestine Small	intestine
40	chr1:161059000-161059400	Active TSS	Pancreas	Pancrea
41	chr1:161059000-161059400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
42	chr1:161059000-161059800	Enhancers	Lung	lung
43	chr1:161059000-161061800	Weak transcription	Osteobl	bone
44	chr1:161059000-161062000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr1:161059200-161059800	Flanking Active TSS	Esophagus	oesophagus
46	chr1:161059200-161060400	Enhancers	Fetal Thymus	thymus
47	chr1:161059200-161061600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:161059200-161061800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:161059200-161062400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links