The 2.0 version of rSNPBase

Variant report

Variant rs55677434
Chromosome Location chr1:59117645-59117646
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59096000-59121600 Weak transcription HUVEC blood vessel
2 chr1:59096600-59121600 Weak transcription Gastric stomach
3 chr1:59102000-59130400 Weak transcription Aorta Aorta
4 chr1:59108200-59130400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:59108600-59121600 Weak transcription Duodenum Mucosa Duodenum
6 chr1:59109000-59121600 Weak transcription HepG2 liver
7 chr1:59109400-59121600 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:59109600-59117800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:59110400-59121600 Weak transcription Fetal Adrenal Gland Adrenal Gland
10 chr1:59110400-59123600 Weak transcription HSMMtube muscle
11 chr1:59110600-59119200 Weak transcription Placenta Placenta
12 chr1:59110800-59125200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr1:59111600-59118200 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:59112400-59121600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr1:59112800-59125600 Weak transcription NHLF lung
16 chr1:59114400-59121600 Weak transcription Fetal Muscle Leg muscle
17 chr1:59114400-59130200 Weak transcription Placenta Amnion Placenta Amnion
18 chr1:59114600-59121600 Weak transcription Fetal Muscle Trunk muscle
19 chr1:59115000-59122800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr1:59115000-59132800 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr1:59115200-59119200 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr1:59115200-59121600 Weak transcription Primary T cells from cord blood blood
23 chr1:59115400-59118000 Weak transcription Brain Cingulate Gyrus brain
24 chr1:59115400-59118000 Weak transcription Stomach Smooth Muscle stomach
25 chr1:59115400-59121400 Weak transcription Primary hematopoietic stem cells blood
26 chr1:59115400-59121600 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:59115400-59121600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr1:59115400-59123800 Weak transcription Colon Smooth Muscle Colon
29 chr1:59115600-59117800 Weak transcription Brain Inferior Temporal Lobe brain
30 chr1:59115600-59117800 Weak transcription Brain Substantia Nigra brain
31 chr1:59115600-59121600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr1:59115600-59121600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
33 chr1:59115600-59121600 Weak transcription Thymus Thymus
34 chr1:59115600-59121800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr1:59115600-59123000 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr1:59115600-59124400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr1:59115600-59138400 Weak transcription Small Intestine intestine
38 chr1:59115800-59117800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:59115800-59117800 Weak transcription HMEC breast
40 chr1:59115800-59119000 Weak transcription Adipose Nuclei Adipose
41 chr1:59115800-59119800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
42 chr1:59115800-59120000 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr1:59115800-59121000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:59115800-59121200 Weak transcription Primary B cells from cord blood blood
45 chr1:59115800-59121400 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr1:59115800-59121600 Weak transcription Primary T cells fromperipheralblood blood
47 chr1:59115800-59121600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:59115800-59121600 Weak transcription Esophagus oesophagus
49 chr1:59115800-59121600 Weak transcription Fetal Lung lung
50 chr1:59115800-59121600 Weak transcription Lung lung

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Last update: Aug 31, 2015