Variant report

Variant	rs4414067
Chromosome Location	chr1:59177813-59177814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59176336..59177899-chr1:59247629..59249270,2	K562	blood:
2	chr1:59161079..59162975-chr1:59176846..59178891,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10489540	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11207278	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11207284	0.84[EUR][1000 genomes]
rs11207297	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207299	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12062727	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12070703	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12073211	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12078684	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12080369	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12082192	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12092264	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12562490	0.85[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12737926	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12742701	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1323281	0.85[CEU][hapmap];0.95[TSI][hapmap]
rs1323282	0.82[AMR][1000 genomes]
rs17117968	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17118041	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17118097	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1961787	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2760480	0.81[CEU][hapmap];0.92[TSI][hapmap]
rs2760482	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs2760483	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2760485	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2811856	0.91[CEU][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2811858	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2811865	0.83[EUR][1000 genomes]
rs2811866	0.83[EUR][1000 genomes]
rs2811867	0.83[EUR][1000 genomes]
rs2811868	0.83[EUR][1000 genomes]
rs2897558	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35180093	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4244016	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4483434	0.83[EUR][1000 genomes]
rs4553223	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4612650	0.81[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4912361	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4912364	0.85[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4912365	0.85[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4912366	0.88[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4912371	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4912375	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55677434	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55892958	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56398740	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61292499	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6659809	1.00[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6664796	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6673162	0.84[EUR][1000 genomes]
rs6682078	0.85[CEU][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs999158	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4414067	INADL	cis	parietal	SCAN
rs4414067	MYSM1	cis	cerebellum	SCAN
rs4414067	MYSM1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:59176000-59182800	Weak transcription	HUVEC	blood vessel
3	chr1:59176200-59183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:59176600-59178000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:59176600-59183800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:59176800-59178200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:59176800-59188800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:59177200-59179800	Weak transcription	Fetal Brain Male	brain
9	chr1:59177200-59180400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:59177200-59180400	Weak transcription	HepG2	liver
11	chr1:59177400-59184000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:59177800-59178000	Enhancers	H9 Cell Line	embryonic stem cell

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