Variant report

Variant	rs2760482
Chromosome Location	chr1:59204825-59204826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59203533..59207535-chr1:59246122..59248670,4	K562	blood:
2	chr1:59200565..59206514-chr1:59243497..59250904,12	K562	blood:

Variant related genes	Relation type
ENSG00000177606	Chromatin interaction
ENSG00000234807	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489540	0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs11207299	0.84[AMR][1000 genomes]
rs12078684	0.83[AMR][1000 genomes]
rs1323281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1323282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1323284	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2760480	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2760483	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2760485	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2811856	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2811858	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2811865	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2811866	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2811867	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2811868	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4414067	0.82[AMR][1000 genomes]
rs4612650	0.81[CEU][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes]
rs4912375	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs61292499	0.84[AMR][1000 genomes]
rs6659809	0.83[AMR][1000 genomes]
rs999158	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754829	chr1:59197556-59215791	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59198200-59206200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:59198600-59205800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:59198800-59207200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:59200400-59205800	Weak transcription	NHDF-Ad	bronchial
5	chr1:59203400-59205800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:59204000-59205200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:59204000-59205400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:59204000-59205400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:59204000-59205600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:59204000-59205600	Enhancers	HMEC	breast
11	chr1:59204000-59205600	Enhancers	NHEK	skin
12	chr1:59204000-59206200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:59204200-59205600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:59204200-59205800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:59204200-59205800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr1:59204200-59206000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:59204400-59205400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr1:59204400-59205800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:59204600-59205400	Enhancers	Primary hematopoietic stem cells	blood
20	chr1:59204600-59205600	Enhancers	Fetal Heart	heart
21	chr1:59204800-59206400	Enhancers	HUVEC	blood vessel

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