Variant report

Variant	rs2811856
Chromosome Location	chr1:59184738-59184739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:59183765-59184804	HUVEC	blood vessel:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:59179996..59185200-chr1:59243009..59246405,6	K562	blood:
2	chr1:59163941..59165511-chr1:59183952..59186205,2	K562	blood:
3	chr1:59181312..59183147-chr1:59184549..59186820,2	K562	blood:
4	chr1:59182880..59185527-chr1:60196883..60198854,2	K562	blood:
5	chr1:59163188..59165848-chr1:59181961..59186034,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000222168	TF binding region
ENSG00000162601	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10489540	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11207297	0.81[EUR][1000 genomes]
rs11207299	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12073211	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12078684	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1323281	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1323282	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1323284	0.91[ASN][1000 genomes]
rs17117968	0.82[CEU][hapmap]
rs17372980	0.81[YRI][hapmap]
rs2760480	0.92[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2760482	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2760483	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2760485	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2811858	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811865	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2811866	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2811867	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2811868	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4414067	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4612650	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4912371	0.80[AFR][1000 genomes]
rs4912375	0.87[CEU][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55892958	0.86[EUR][1000 genomes]
rs61292499	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6659809	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs999158	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:59176800-59188800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:59180600-59192800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:59183000-59184800	Enhancers	Colon Smooth Muscle	Colon
5	chr1:59183000-59185200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:59183000-59185400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:59183000-59185400	Enhancers	Fetal Muscle Leg	muscle
8	chr1:59183000-59185600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:59183000-59185800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:59183000-59189400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:59183200-59184800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr1:59183200-59185000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:59183200-59185000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:59183200-59185000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr1:59183200-59185200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:59183200-59185200	Enhancers	Adipose Nuclei	Adipose
17	chr1:59183200-59185400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr1:59183200-59185400	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr1:59183400-59184800	Enhancers	Rectal Smooth Muscle	rectum
20	chr1:59183400-59185000	Enhancers	Primary T cells from cord blood	blood
21	chr1:59183400-59185200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr1:59183400-59197600	Weak transcription	Aorta	Aorta
23	chr1:59183600-59184800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:59183600-59184800	Flanking Active TSS	Dnd41	blood
25	chr1:59183600-59193000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr1:59183800-59184800	Enhancers	Fetal Stomach	stomach
27	chr1:59183800-59184800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr1:59183800-59184800	Enhancers	HMEC	breast
29	chr1:59183800-59184800	Enhancers	NHEK	skin
30	chr1:59183800-59185200	Enhancers	Stomach Smooth Muscle	stomach
31	chr1:59184000-59184800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr1:59184000-59184800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:59184000-59185000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr1:59184000-59185000	Weak transcription	Lung	lung
35	chr1:59184000-59185200	Weak transcription	Left Ventricle	heart
36	chr1:59184000-59187000	Weak transcription	Right Atrium	heart
37	chr1:59184000-59192600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr1:59184200-59184800	Enhancers	Liver	Liver
39	chr1:59184200-59184800	Enhancers	Fetal Heart	heart
40	chr1:59184200-59184800	Flanking Active TSS	HUVEC	blood vessel
41	chr1:59184200-59188600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr1:59184400-59184800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr1:59184400-59184800	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr1:59184400-59185200	Weak transcription	Spleen	Spleen
45	chr1:59184400-59186000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr1:59184400-59186400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:59184400-59187000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:59184600-59185200	Enhancers	Primary hematopoietic stem cells	blood
49	chr1:59184600-59185600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:59184600-59186200	Weak transcription	Muscle Satellite Cultured Cells	--

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