Variant report

Variant	rs999158
Chromosome Location	chr1:59181480-59181481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59179996..59185200-chr1:59243009..59246405,6	K562	blood:
2	chr1:59174019..59176755-chr1:59180652..59182494,2	K562	blood:
3	chr1:59181312..59183147-chr1:59184549..59186820,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10489540	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs11207297	0.82[EUR][1000 genomes]
rs11207299	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12073211	0.89[EUR][1000 genomes]
rs12078684	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1323281	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1323282	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1323284	0.87[ASN][1000 genomes]
rs17117968	0.84[CEU][hapmap]
rs17118097	0.81[CEU][hapmap]
rs2760480	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2760482	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2760483	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2760485	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2811856	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2811858	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2811865	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2811866	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2811867	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2811868	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4414067	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4612650	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4912375	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55892958	0.87[EUR][1000 genomes]
rs61292499	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6659809	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6664796	0.81[CEU][hapmap];0.80[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:59176000-59182800	Weak transcription	HUVEC	blood vessel
3	chr1:59176200-59183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:59176600-59183800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:59176800-59188800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:59177400-59184000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:59180600-59192800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:59181200-59181800	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links