Variant report

Variant	rs2760485
Chromosome Location	chr1:59183001-59183002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59179996..59185200-chr1:59243009..59246405,6	K562	blood:
2	chr1:59182880..59185527-chr1:60196883..60198854,2	K562	blood:
3	chr1:59181769..59184319-chr1:59244271..59246405,2	K562	blood:
4	chr1:59181312..59183147-chr1:59184549..59186820,2	K562	blood:
5	chr1:59163188..59165848-chr1:59181961..59186034,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162601	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10489540	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11207297	0.81[EUR][1000 genomes]
rs11207299	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12073211	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12078684	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1323281	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323282	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1323284	0.91[ASN][1000 genomes]
rs2760480	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2760482	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2760483	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811856	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2811858	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2811865	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2811866	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2811867	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2811868	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4414067	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4612650	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4912371	0.80[AFR][1000 genomes]
rs4912375	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55892958	0.86[EUR][1000 genomes]
rs61292499	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6659809	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs999158	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:59176200-59183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:59176600-59183800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:59176800-59188800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:59177400-59184000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:59180600-59192800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:59182800-59184000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr1:59182800-59184200	Enhancers	HUVEC	blood vessel
9	chr1:59183000-59183600	Enhancers	Dnd41	blood
10	chr1:59183000-59184800	Enhancers	Colon Smooth Muscle	Colon
11	chr1:59183000-59185200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:59183000-59185400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:59183000-59185400	Enhancers	Fetal Muscle Leg	muscle
14	chr1:59183000-59185600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr1:59183000-59185800	Enhancers	Primary T cells fromperipheralblood	blood
16	chr1:59183000-59189400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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