Variant report

Variant	rs1323284
Chromosome Location	chr1:59211367-59211368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1323281	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1323282	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2760480	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2760482	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2760483	0.89[ASN][1000 genomes]
rs2760485	0.91[ASN][1000 genomes]
rs2811856	0.91[ASN][1000 genomes]
rs2811858	0.91[ASN][1000 genomes]
rs2811865	0.94[ASN][1000 genomes]
rs2811866	0.91[ASN][1000 genomes]
rs2811867	0.91[ASN][1000 genomes]
rs2811868	0.85[ASN][1000 genomes]
rs999158	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754829	chr1:59197556-59215791	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59206200-59214200	Weak transcription	Fetal Kidney	kidney
2	chr1:59206200-59221000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:59207600-59220000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:59207800-59220000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:59207800-59220000	Weak transcription	Psoas Muscle	Psoas
6	chr1:59208000-59215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:59210600-59212600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:59210800-59211600	Enhancers	NHDF-Ad	bronchial
9	chr1:59210800-59211800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:59210800-59212200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:59210800-59212600	Enhancers	NHEK	skin
12	chr1:59210800-59212800	Enhancers	HMEC	breast
13	chr1:59211000-59212600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:59211200-59211600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:59211200-59212600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:59211200-59212600	Enhancers	NH-A	brain
17	chr1:59211200-59212800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:59211200-59212800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:59211200-59213000	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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