The 2.0 version of rSNPBase

Variant report

Variant rs55679730
Chromosome Location chr12:105409966-105409967
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:105381800-105411400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr12:105387600-105412200 Weak transcription HepG2 liver
3 chr12:105389000-105430600 Weak transcription Hela-S3 cervix
4 chr12:105389400-105411200 Weak transcription Osteobl bone
5 chr12:105393200-105411400 Weak transcription Muscle Satellite Cultured Cells --
6 chr12:105393200-105418200 Weak transcription Rectal Smooth Muscle rectum
7 chr12:105393400-105421200 Weak transcription NHLF lung
8 chr12:105393600-105412000 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr12:105393800-105412000 Weak transcription Lung lung
10 chr12:105393800-105412200 Weak transcription Placenta Placenta
11 chr12:105393800-105412800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr12:105393800-105414400 Weak transcription Esophagus oesophagus
13 chr12:105393800-105414600 Weak transcription Colonic Mucosa Colon
14 chr12:105393800-105417400 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr12:105394000-105414000 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr12:105394000-105418000 Weak transcription Colon Smooth Muscle Colon
17 chr12:105394200-105422800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr12:105394200-105435000 Weak transcription Brain Cingulate Gyrus brain
19 chr12:105394400-105412000 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr12:105394800-105434200 Weak transcription Brain Substantia Nigra brain
21 chr12:105395200-105414400 Weak transcription Fetal Kidney kidney
22 chr12:105397400-105419400 Weak transcription Fetal Brain Male brain
23 chr12:105397400-105443200 Weak transcription H9 Cell Line embryonic stem cell
24 chr12:105397800-105412400 Weak transcription Psoas Muscle Psoas
25 chr12:105398000-105412000 Weak transcription NHEK skin
26 chr12:105399000-105414200 Weak transcription Small Intestine intestine
27 chr12:105399200-105414200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr12:105399400-105412400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr12:105400000-105411800 Weak transcription Aorta Aorta
30 chr12:105400600-105411800 Weak transcription HMEC breast
31 chr12:105401400-105415200 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr12:105401800-105412000 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr12:105404000-105410000 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr12:105405800-105410800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr12:105405800-105411200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr12:105405800-105412400 Strong transcription HUES64 Cell Line embryonic stem cell
37 chr12:105406200-105413200 Strong transcription Duodenum Mucosa Duodenum
38 chr12:105406400-105410800 Strong transcription Sigmoid Colon Sigmoid Colon
39 chr12:105406400-105413000 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr12:105406600-105410200 Strong transcription A549 lung
41 chr12:105407000-105412800 Strong transcription Adipose Nuclei Adipose
42 chr12:105407200-105411400 Weak transcription Primary B cells from cord blood blood
43 chr12:105407200-105412200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr12:105407200-105413800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr12:105407200-105419800 Weak transcription Fetal Brain Female brain
46 chr12:105407400-105410000 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr12:105407400-105418400 Weak transcription Right Ventricle heart
48 chr12:105407600-105410800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr12:105407600-105412400 Strong transcription Primary hematopoietic stem cells short term culture blood
50 chr12:105407600-105413600 Weak transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015