Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105352802..105355166-chr12:105362542..105365310,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11112291	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11112292	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11112293	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11112294	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11112295	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11112315	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11112316	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11112318	0.90[EUR][1000 genomes]
rs11495192	0.94[EUR][1000 genomes]
rs12369202	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12369490	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12372369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12372454	0.88[EUR][1000 genomes]
rs17036595	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036608	0.90[EUR][1000 genomes]
rs1801070	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55679730	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55916348	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7310860	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73193619	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73193626	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73193630	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73193631	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7956643	0.90[EUR][1000 genomes]
rs7966109	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv869	chr12:105363425-105394904	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105360400-105368000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr12:105362000-105363600	Enhancers	GM12878-XiMat	blood

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