Variant report

Variant	rs55681762
Chromosome Location	chr6:36804703-36804704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36803997..36809047-chr6:36852852..36856509,4	K562	blood:
2	chr6:36802135..36806247-chr6:36814930..36817365,4	K562	blood:
3	chr6:36804125..36807562-chr6:36952553..36955386,3	K562	blood:
4	chr6:36803679..36805737-chr6:36818259..36820032,3	K562	blood:
5	chr6:36804125..36806992-chr6:36952553..36954934,2	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000198663	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11964396	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12111266	0.89[EUR][1000 genomes]
rs12111291	0.89[EUR][1000 genomes]
rs12524018	0.89[EUR][1000 genomes]
rs12524422	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12524649	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12525540	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12526699	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12529199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529769	0.87[EUR][1000 genomes]
rs17374068	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1864753	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35694858	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41408445	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4348312	0.90[EUR][1000 genomes]
rs4714013	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55913388	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56240344	0.91[EUR][1000 genomes]
rs56302344	0.89[EUR][1000 genomes]
rs66474948	0.89[EUR][1000 genomes]
rs66566790	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67273613	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68042914	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846046	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72846078	0.90[EUR][1000 genomes]
rs73416282	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7745555	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5262	chr6:36799329-36826210	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36791200-36805800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:36798600-36805400	Weak transcription	Right Ventricle	heart
3	chr6:36798600-36805400	Weak transcription	HUVEC	blood vessel
4	chr6:36798600-36806800	Weak transcription	Ovary	ovary
5	chr6:36798800-36805600	Weak transcription	Right Atrium	heart
6	chr6:36801000-36805000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:36802200-36804800	Enhancers	Fetal Thymus	thymus
8	chr6:36802200-36806400	Enhancers	Fetal Heart	heart
9	chr6:36803000-36805800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:36803000-36806000	Weak transcription	Left Ventricle	heart
11	chr6:36803000-36806400	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:36803200-36806000	Weak transcription	Fetal Brain Female	brain
13	chr6:36803200-36806400	Weak transcription	Fetal Brain Male	brain
14	chr6:36803200-36806600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:36803400-36806200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:36803800-36806600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr6:36804000-36807000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:36804000-36808200	Active TSS	Brain Anterior Caudate	brain
19	chr6:36804200-36805400	Bivalent Enhancer	HepG2	liver
20	chr6:36804600-36804800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr6:36804600-36806000	Bivalent Enhancer	Fetal Muscle Leg	muscle

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