Variant report

Variant	rs73416282
Chromosome Location	chr6:36799028-36799029
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36795450..36797184-chr6:36798475..36800268,2	MCF-7	breast:
2	chr6:36798286..36801016-chr6:36828535..36830113,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11964396	0.80[AMR][1000 genomes]
rs12111266	0.83[EUR][1000 genomes]
rs12111291	0.83[EUR][1000 genomes]
rs12524018	0.83[EUR][1000 genomes]
rs12524422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524649	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12525540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12529199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12529769	0.82[EUR][1000 genomes]
rs17374068	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864753	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35694858	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41408445	0.80[AMR][1000 genomes]
rs4348312	0.85[EUR][1000 genomes]
rs4714013	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55681762	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55913388	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56240344	0.86[EUR][1000 genomes]
rs56302344	0.83[EUR][1000 genomes]
rs66474948	0.83[EUR][1000 genomes]
rs66566790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67273613	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68042914	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72846046	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72846078	0.85[EUR][1000 genomes]
rs7745555	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36788400-36802400	Weak transcription	Fetal Kidney	kidney
2	chr6:36789800-36802200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:36790600-36799400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:36791200-36805800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:36795200-36802600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:36795800-36801800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:36795800-36802200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:36796400-36802200	Weak transcription	Placenta	Placenta
9	chr6:36797000-36800000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:36798200-36802600	Weak transcription	Brain Substantia Nigra	brain
11	chr6:36798600-36800000	Weak transcription	Fetal Intestine Small	intestine
12	chr6:36798600-36800200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:36798600-36802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:36798600-36802400	Weak transcription	Brain Angular Gyrus	brain
15	chr6:36798600-36802400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:36798600-36802400	Weak transcription	Fetal Brain Male	brain
17	chr6:36798600-36802800	Weak transcription	Left Ventricle	heart
18	chr6:36798600-36805400	Weak transcription	Right Ventricle	heart
19	chr6:36798600-36805400	Weak transcription	HUVEC	blood vessel
20	chr6:36798600-36806800	Weak transcription	Ovary	ovary
21	chr6:36798800-36800400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:36798800-36802200	Weak transcription	Fetal Brain Female	brain
23	chr6:36798800-36802200	Weak transcription	Fetal Stomach	stomach
24	chr6:36798800-36802400	Weak transcription	Brain Germinal Matrix	brain
25	chr6:36798800-36802400	Enhancers	HepG2	liver
26	chr6:36798800-36802800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:36798800-36804000	Weak transcription	Brain Anterior Caudate	brain
28	chr6:36798800-36805600	Weak transcription	Right Atrium	heart
29	chr6:36799000-36799400	Weak transcription	Fetal Heart	heart

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