Variant report

Variant	rs55682221
Chromosome Location	chr6:29856546-29856547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr6:29855001-29856615	GM12878	blood:	n/a	chr6:29856228-29856240
2	MTA3	chr6:29854945-29856560	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:29855059-29856609	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:29854956-29856640	GM12878	blood:	n/a	n/a
5	POLR2A	chr6:29855110-29856607	GM12878	blood:	n/a	n/a
6	POLR2A	chr6:29854885-29858979	GM12892	blood:	n/a	n/a
7	PAX5	chr6:29855645-29856609	GM12878	blood:	n/a	n/a
8	POLR2A	chr6:29855071-29856591	GM12891	blood:	n/a	n/a
9	POLR2A	chr6:29855004-29856592	GM12892	blood:	n/a	n/a
10	POLR2A	chr6:29855073-29856572	GM12891	blood:	n/a	n/a
11	POLR2A	chr6:29854966-29859103	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:29854926-29858992	GM12892	blood:	n/a	n/a
13	POLR2A	chr6:29856173-29856549	GM12891	blood:	n/a	n/a
14	POLR2A	chr6:29855100-29856586	GM12892	blood:	n/a	n/a
15	POLR2A	chr6:29855174-29856632	H1-hESC	embryonic stem cell:	n/a	n/a
16	POU2F2	chr6:29855012-29856608	GM12878	blood:	n/a	n/a
17	IRF4	chr6:29855768-29856619	GM12878	blood:	n/a	chr6:29856151-29856165
18	ZEB1	chr6:29855853-29856564	GM12878	blood:	n/a	n/a
19	TAF1	chr6:29855856-29856564	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29856538-29856588	BE2_C	brain:	n/a
2	chr6:29856538-29856588	A549	lung:	n/a
3	chr6:29856538-29856588	AoSMC	blood vessel:	n/a
4	chr6:29856538-29856588	HRE	kidney:	n/a
5	chr6:29856538-29856588	HPAEpiC	pulmonary alveolar:	n/a
6	chr6:29856538-29856588	Caco-2	colon:	n/a
7	chr6:29856538-29856588	IMR90	lung:	fetal
8	chr6:29856538-29856588	PrEC	prostate:	n/a
9	chr6:29856538-29856588	HCM	heart:	n/a
10	chr6:29856538-29856588	ovcar-3	ovarian:	n/a
11	chr6:29856538-29856588	ProgFib	skin:	n/a
12	chr6:29856538-29856588	RPTEC	kidney:	n/a
13	chr6:29856538-29856588	Hela-S3	cervix:	n/a
14	chr6:29856538-29856588	GM12891	blood:	n/a
15	chr6:29856538-29856588	AG04450	lung:	fetal
16	chr6:29856538-29856588	HepG2	liver:	n/a
17	chr6:29856538-29856588	HCPEpiC	choroid plexus:	n/a
18	chr6:29856538-29856588	PFSK-1	brain:	n/a
19	chr6:29856538-29856588	SAEC	small airway:	n/a
20	chr6:29856538-29856588	NB4	blood:	n/a
21	chr6:29856538-29856588	SK-N-SH_RA	brain:	n/a
22	chr6:29856538-29856588	HUVEC	blood vessel:	n/a
23	chr6:29856538-29856588	HL-60	blood:	n/a
24	chr6:29856538-29856588	Jurkat	blood:	n/a
25	chr6:29856538-29856588	MCF-7	breast:	n/a
26	chr6:29856538-29856588	GM06990	blood:	n/a
27	chr6:29856538-29856588	HCF	heart:	n/a
28	chr6:29856538-29856588	HNPCEpiC	eye:	n/a
29	chr6:29856538-29856588	CMK	blood:	n/a
30	chr6:29856538-29856588	MCF10A-Er-Src	breast:	n/a
31	chr6:29856538-29856588	NT2-D1	testis:	n/a
32	chr6:29856538-29856588	H1-hESC	embryonic stem cell:	embryo
33	chr6:29856538-29856588	HEK293	kidney:	embryo
34	chr6:29856538-29856588	HMEC	breast:	n/a
35	chr6:29856538-29856588	GM19239	blood:	n/a
36	chr6:29856538-29856588	ECC-1	luminal epithelium:	n/a
37	chr6:29856538-29856588	GM12878	blood:	n/a
38	chr6:29856538-29856588	SKMC	muscle:	n/a
39	chr6:29856538-29856588	HEEpiC	esophagus:	n/a
40	chr6:29856538-29856588	HRCEpiC	kidney:	n/a
41	chr6:29856538-29856588	AG09319	gingival:	n/a
42	chr6:29856538-29856588	HIPEpiC	eye:	n/a
43	chr6:29856538-29856588	HCT-116	colon:	n/a
44	chr6:29856538-29856588	AG10803	skin:	n/a
45	chr6:29856538-29856588	BJ	skin:	n/a
46	chr6:29856538-29856588	NHDF-neo	bronchial:	n/a
47	chr6:29856538-29856588	SK-N-SH	brain:	n/a
48	chr6:29856538-29856588	U87	brain:	n/a
49	chr6:29856538-29856588	AG09309	skin:	n/a
50	chr6:29856538-29856588	K562	blood:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29855991..29858588-chr6:29944087..29945954,2	MCF-7	breast:
2	chr6:29854712..29856936-chr6:29909499..29912386,4	MCF-7	breast:

No data

Variant related genes	Relation type
HCG4P7	TF binding region
HCG4P7	CpG island
ENSG00000206503	Chromatin interaction
ENSG00000227766	Chromatin interaction
ENSG00000204625	Chromatin interaction

Extended variants
information (count: 382 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1056243	0.85[EUR][1000 genomes]
rs1991955	0.89[EUR][1000 genomes]
rs1991956	0.89[EUR][1000 genomes]
rs2074485	0.85[EUR][1000 genomes]
rs2240072	0.81[EUR][1000 genomes]
rs2240073	0.85[EUR][1000 genomes]
rs2394241	0.89[EUR][1000 genomes]
rs2893994	0.88[EUR][1000 genomes]
rs4087724	0.81[EUR][1000 genomes]
rs4599690	0.89[EUR][1000 genomes]
rs55676227	0.85[EUR][1000 genomes]
rs55725536	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55748016	0.89[EUR][1000 genomes]
rs55778742	0.87[EUR][1000 genomes]
rs55795233	0.81[EUR][1000 genomes]
rs55803658	0.81[EUR][1000 genomes]
rs55882115	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55947552	0.92[EUR][1000 genomes]
rs55989137	0.85[EUR][1000 genomes]
rs56054591	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56066909	0.85[EUR][1000 genomes]
rs56079109	0.89[EUR][1000 genomes]
rs56088713	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56110645	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56148889	0.87[ASN][1000 genomes]
rs56169793	0.87[EUR][1000 genomes]
rs56174454	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56263834	0.81[EUR][1000 genomes]
rs56285764	0.81[EUR][1000 genomes]
rs56389301	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58946827	0.87[EUR][1000 genomes]
rs59500422	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62389327	0.83[EUR][1000 genomes]
rs62389328	0.83[EUR][1000 genomes]
rs62389329	0.87[EUR][1000 genomes]
rs62389331	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62389356	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62389357	0.81[ASN][1000 genomes]
rs62389359	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62389590	0.85[EUR][1000 genomes]
rs62389592	0.85[EUR][1000 genomes]
rs62390374	0.85[EUR][1000 genomes]
rs62390375	0.85[EUR][1000 genomes]
rs62390376	0.85[EUR][1000 genomes]
rs62390377	0.85[EUR][1000 genomes]
rs62390378	0.85[EUR][1000 genomes]
rs62390379	0.85[EUR][1000 genomes]
rs62390400	0.81[EUR][1000 genomes]
rs62390401	0.83[EUR][1000 genomes]
rs62390402	0.83[EUR][1000 genomes]
rs62390860	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62390861	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62390862	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62390893	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62390895	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62390897	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62390898	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62390901	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62390903	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62390904	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62390911	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62390915	0.84[EUR][1000 genomes]
rs62390916	0.87[EUR][1000 genomes]
rs62390917	0.87[EUR][1000 genomes]
rs62390935	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:317 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	esv3423001	chr6:29733216-29878601	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	esv3330285	chr6:29736281-29881328	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
10	esv3396224	chr6:29754243-29888093	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
11	esv3430372	chr6:29759523-29974277	Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
12	esv3426050	chr6:29761594-29918407	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	esv3431350	chr6:29765473-29922767	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	esv3354193	chr6:29773857-29867902	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	esv3451016	chr6:29774115-29929436	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
16	esv3369144	chr6:29775824-29872385	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	esv3500392	chr6:29777854-29871802	Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
18	esv3500393	chr6:29777854-29871802	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
19	esv3384912	chr6:29778488-29872579	ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
20	esv3431922	chr6:29779132-29873171	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
21	esv3338581	chr6:29780045-29890754	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
22	esv17468	chr6:29782014-29923275	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
23	esv3411103	chr6:29783090-29930409	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
24	esv2758040	chr6:29792434-29975144	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
25	esv2759412	chr6:29792434-29975144	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
26	esv3391180	chr6:29798321-29977430	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
27	esv1828587	chr6:29809138-29904721	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
28	esv1849827	chr6:29812776-29918720	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
29	esv1851637	chr6:29813719-29912800	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
30	nsv820564	chr6:29814830-29923275	Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
31	nsv823469	chr6:29814830-29923275	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
32	nsv601232	chr6:29814977-29895250	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
33	nsv601233	chr6:29814977-29896659	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
34	esv20595	chr6:29815609-29874977	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
35	esv1845786	chr6:29817123-29955129	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
36	esv1810372	chr6:29817323-29913915	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
37	esv1822590	chr6:29817323-29913915	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
38	esv1848127	chr6:29817323-29966451	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
39	esv3346286	chr6:29818834-29908132	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
40	esv3351	chr6:29819363-29886517	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
41	esv1819995	chr6:29824229-29904721	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
42	esv1810879	chr6:29824229-29917771	Transcr. at gene 5' and 3' Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
43	esv1848221	chr6:29824229-29918837	Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
44	nsv508398	chr6:29825777-30003403	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
45	esv3369212	chr6:29827361-29960177	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
46	nsv432859	chr6:29828972-29898897	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
47	esv1794708	chr6:29829340-29912800	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
48	esv1831742	chr6:29829340-29912800	Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
49	esv1803223	chr6:29829390-29913627	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
50	esv1812939	chr6:29830358-29913929	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29854400-29856600	Active TSS	Fetal Intestine Large	intestine
2	chr6:29854600-29856600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:29854600-29856600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:29854600-29856600	Active TSS	Colonic Mucosa	Colon
5	chr6:29854600-29857000	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr6:29854600-29857200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:29854800-29856600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:29854800-29856600	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr6:29854800-29856600	Active TSS	Aorta	Aorta
10	chr6:29854800-29856800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:29854800-29857000	Active TSS	Liver	Liver
12	chr6:29854800-29857000	Active TSS	Rectal Smooth Muscle	rectum
13	chr6:29855000-29856600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:29855000-29856600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr6:29855000-29856600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr6:29855000-29856600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr6:29855000-29856600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:29855000-29856600	Active TSS	Primary T cells from cord blood	blood
19	chr6:29855000-29856600	Active TSS	Brain Angular Gyrus	brain
20	chr6:29855000-29856600	Active TSS	Brain Hippocampus Middle	brain
21	chr6:29855000-29856600	Active TSS	Colon Smooth Muscle	Colon
22	chr6:29855000-29856600	Bivalent/Poised TSS	Thymus	Thymus
23	chr6:29855000-29856600	Bivalent/Poised TSS	HSMMtube	muscle
24	chr6:29855000-29856800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
25	chr6:29855000-29856800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
26	chr6:29855000-29856800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr6:29855000-29856800	Active TSS	Lung	lung
28	chr6:29855000-29856800	Active TSS	Ovary	ovary
29	chr6:29855000-29856800	Active TSS	Right Atrium	heart
30	chr6:29855000-29856800	Active TSS	Dnd41	blood
31	chr6:29855000-29856800	Active TSS	Osteobl	bone
32	chr6:29855000-29857000	Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr6:29855000-29857000	Active TSS	Brain Cingulate Gyrus	brain
34	chr6:29855200-29856600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:29855200-29856600	Active TSS	Brain Anterior Caudate	brain
36	chr6:29855200-29856600	Active TSS	Brain Substantia Nigra	brain
37	chr6:29855200-29856600	Active TSS	Fetal Lung	lung
38	chr6:29855200-29856600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
39	chr6:29855200-29856600	Active TSS	Stomach Mucosa	stomach
40	chr6:29855200-29856600	Active TSS	Hela-S3	cervix
41	chr6:29855200-29856600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
42	chr6:29855200-29856600	Active TSS	NHLF	lung
43	chr6:29855200-29856800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:29855200-29856800	Active TSS	NHDF-Ad	bronchial
45	chr6:29855400-29856600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:29855400-29856600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:29855400-29856600	Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr6:29855400-29856600	Bivalent/Poised TSS	Fetal Brain Female	brain
49	chr6:29855400-29856600	Active TSS	NHEK	skin
50	chr6:29855400-29856800	Active TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links