Variant report

Variant	rs55683203
Chromosome Location	chr17:15194861-15194862
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12449310	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12452365	0.91[EUR][1000 genomes]
rs12452565	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12452683	0.91[EUR][1000 genomes]
rs16951345	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16951380	0.91[EUR][1000 genomes]
rs56085830	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58893387	0.91[EUR][1000 genomes]
rs7212138	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73977995	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73977999	0.83[EUR][1000 genomes]
rs73978000	0.83[EUR][1000 genomes]
rs73978002	0.91[EUR][1000 genomes]
rs8069939	0.91[EUR][1000 genomes]
rs8077862	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8079693	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8081188	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15189600-15195000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr17:15191200-15195200	Weak transcription	Right Atrium	heart
3	chr17:15191400-15195000	Weak transcription	Right Ventricle	heart
4	chr17:15191400-15195400	Weak transcription	Lung	lung
5	chr17:15191600-15205200	Weak transcription	Fetal Lung	lung
6	chr17:15192800-15195800	Enhancers	NH-A	brain
7	chr17:15193000-15195000	Weak transcription	Left Ventricle	heart
8	chr17:15193000-15195200	Weak transcription	Gastric	stomach
9	chr17:15193200-15195000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:15193200-15195000	Weak transcription	K562	blood
11	chr17:15193400-15195000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:15193400-15201400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:15193600-15195000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr17:15193600-15195200	Enhancers	Fetal Heart	heart
15	chr17:15193800-15195600	Enhancers	HSMMtube	muscle
16	chr17:15193800-15196000	Enhancers	Osteobl	bone
17	chr17:15194000-15195200	Enhancers	A549	lung
18	chr17:15194600-15195000	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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