Variant report

Variant	rs73977995
Chromosome Location	chr17:15204778-15204779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12449310	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12452365	0.82[EUR][1000 genomes]
rs12452565	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12452683	0.82[EUR][1000 genomes]
rs16951345	0.82[EUR][1000 genomes]
rs16951380	0.82[EUR][1000 genomes]
rs55683203	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56085830	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58893387	0.82[EUR][1000 genomes]
rs7212138	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73977999	0.92[EUR][1000 genomes]
rs73978000	0.92[EUR][1000 genomes]
rs73978002	0.82[EUR][1000 genomes]
rs8069939	0.82[EUR][1000 genomes]
rs8077862	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8079693	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8081188	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv907703	chr17:15199907-15370701	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15191600-15205200	Weak transcription	Fetal Lung	lung
2	chr17:15201800-15208200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr17:15202000-15205000	Weak transcription	HSMMtube	muscle
4	chr17:15202000-15208000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:15202000-15208800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr17:15202000-15209400	Weak transcription	Osteobl	bone
7	chr17:15202400-15209400	Weak transcription	NHDF-Ad	bronchial
8	chr17:15203400-15207200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr17:15204200-15205200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr17:15204400-15204800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:15204400-15205800	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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