The 2.0 version of rSNPBase

Variant report

Variant rs55684412
Chromosome Location chr1:98186229-98186230
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:98136200-98188800 Weak transcription Left Ventricle heart
2 chr1:98148000-98192800 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:98153400-98187800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr1:98166200-98186800 Weak transcription HSMM muscle
5 chr1:98176400-98188200 Weak transcription Right Ventricle heart
6 chr1:98177000-98188200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr1:98177200-98254600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:98179000-98188000 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:98179000-98220800 Weak transcription Psoas Muscle Psoas
10 chr1:98179600-98187400 Strong transcription Monocytes-CD14+_RO01746 blood
11 chr1:98179800-98187400 Strong transcription Primary monocytes fromperipheralblood blood
12 chr1:98180200-98187200 Strong transcription Primary hematopoietic stem cells blood
13 chr1:98181200-98188600 Weak transcription Lung lung
14 chr1:98181400-98204400 Weak transcription Osteobl bone
15 chr1:98181600-98188600 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr1:98181800-98187400 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr1:98182000-98187000 Weak transcription Brain Substantia Nigra brain
18 chr1:98182000-98187000 Weak transcription Small Intestine intestine
19 chr1:98182000-98187600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr1:98182600-98186600 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr1:98182600-98187200 Strong transcription Dnd41 blood
22 chr1:98182800-98187600 Weak transcription Fetal Lung lung
23 chr1:98183200-98187200 Strong transcription Liver Liver
24 chr1:98183600-98189600 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:98183600-98279600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:98183800-98186600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:98183800-98189200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:98184000-98187200 Weak transcription Fetal Thymus thymus
29 chr1:98184000-98188400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:98184200-98188600 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr1:98184400-98188600 Weak transcription Stomach Smooth Muscle stomach
32 chr1:98184800-98186600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:98185000-98187200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:98185200-98187200 Strong transcription Primary T cells fromperipheralblood blood
35 chr1:98185200-98187200 Strong transcription Primary T helper cells fromperipheralblood blood
36 chr1:98185400-98186800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:98185400-98187000 Strong transcription Primary neutrophils fromperipheralblood blood
38 chr1:98185400-98187000 Strong transcription Adipose Nuclei Adipose
39 chr1:98185400-98187200 Strong transcription Primary T helper naive cells fromperipheralblood blood
40 chr1:98185400-98187200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
41 chr1:98185600-98187200 Strong transcription Primary B cells from cord blood blood
42 chr1:98185600-98187800 Weak transcription HMEC breast
43 chr1:98185800-98187200 Strong transcription Primary T helper cells PMA-I stimulated --
44 chr1:98186200-98186400 Enhancers Fetal Intestine Large intestine
45 chr1:98186200-98187200 Genic enhancers Muscle Satellite Cultured Cells --
46 chr1:98186200-98187400 Enhancers NHDF-Ad bronchial
47 chr1:98186200-98220200 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015