The 2.0 version of rSNPBase

Variant report

Variant rs3790389
Chromosome Location chr1:98156892-98156893
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:98114200-98159000 Weak transcription NHDF-Ad bronchial
2 chr1:98125600-98159400 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr1:98130800-98171800 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:98134200-98158600 Weak transcription Stomach Smooth Muscle stomach
5 chr1:98135600-98159000 Weak transcription Colon Smooth Muscle Colon
6 chr1:98136200-98161000 Weak transcription Lung lung
7 chr1:98136200-98188800 Weak transcription Left Ventricle heart
8 chr1:98136600-98162800 Weak transcription Esophagus oesophagus
9 chr1:98140600-98159000 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr1:98141200-98165000 Weak transcription HSMM muscle
11 chr1:98141600-98165800 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:98141800-98166000 Weak transcription Brain Hippocampus Middle brain
13 chr1:98141800-98185400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:98142400-98161200 Weak transcription Aorta Aorta
15 chr1:98143000-98159000 Weak transcription Thymus Thymus
16 chr1:98143200-98158600 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr1:98143600-98165800 Weak transcription Brain Inferior Temporal Lobe brain
18 chr1:98144000-98161200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr1:98144000-98165400 Weak transcription Brain Substantia Nigra brain
20 chr1:98144000-98176600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr1:98144200-98157800 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr1:98144200-98158800 Weak transcription Duodenum Mucosa Duodenum
23 chr1:98144200-98163200 Weak transcription Primary T regulatory cells fromperipheralblood blood
24 chr1:98144200-98165800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr1:98144200-98166800 Weak transcription Osteobl bone
26 chr1:98144400-98159000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:98144800-98162800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
28 chr1:98146000-98165400 Weak transcription HMEC breast
29 chr1:98146400-98166800 Weak transcription Primary T cells fromperipheralblood blood
30 chr1:98146800-98166000 Weak transcription Adipose Nuclei Adipose
31 chr1:98147000-98160800 Weak transcription Muscle Satellite Cultured Cells --
32 chr1:98148000-98158400 Weak transcription Spleen Spleen
33 chr1:98148000-98159200 Weak transcription Primary B cells from cord blood blood
34 chr1:98148000-98192800 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr1:98148200-98159000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:98148200-98159000 Weak transcription Primary T cells from cord blood blood
37 chr1:98151200-98164800 Weak transcription Primary hematopoietic stem cells blood
38 chr1:98152400-98166000 Strong transcription Monocytes-CD14+_RO01746 blood
39 chr1:98152600-98165800 Weak transcription NHLF lung
40 chr1:98153400-98187800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr1:98153600-98159000 Weak transcription Fetal Lung lung
42 chr1:98153600-98165200 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr1:98153600-98165200 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr1:98153600-98165600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:98153600-98167000 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr1:98153600-98167600 Weak transcription Ovary ovary
47 chr1:98155000-98160000 Weak transcription Brain Anterior Caudate brain
48 chr1:98155200-98157600 Strong transcription Dnd41 blood
49 chr1:98155200-98167400 Strong transcription Primary monocytes fromperipheralblood blood
50 chr1:98155800-98161600 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015