Variant report

Variant	rs556857474
Chromosome Location	chr10:28342527-28342528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052182	chr10:28259142-28361830	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv894988	chr10:28337570-28410989	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv466855	chr10:28341783-28400835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv550284	chr10:28341783-28400835	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28330000-28345000	Weak transcription	Pancreas	Pancrea
2	chr10:28331200-28345000	Weak transcription	Aorta	Aorta
3	chr10:28335000-28345800	Weak transcription	Brain Angular Gyrus	brain
4	chr10:28335600-28345000	Weak transcription	Fetal Stomach	stomach
5	chr10:28336200-28349400	Weak transcription	Gastric	stomach
6	chr10:28336400-28346000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:28336600-28345600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:28336800-28346600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:28337400-28342600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:28337400-28347400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:28337800-28345000	Weak transcription	Fetal Intestine Small	intestine
12	chr10:28337800-28346000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:28338200-28345000	Weak transcription	Left Ventricle	heart
14	chr10:28338400-28345000	Weak transcription	Esophagus	oesophagus
15	chr10:28338600-28342600	Weak transcription	NHDF-Ad	bronchial
16	chr10:28339000-28345000	Weak transcription	Lung	lung
17	chr10:28339800-28345000	Weak transcription	Primary T cells from cord blood	blood
18	chr10:28341200-28350000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr10:28341200-28377600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:28341400-28346400	Weak transcription	Spleen	Spleen
21	chr10:28341600-28342600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:28341800-28348600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:28341800-28349000	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:28341800-28349800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr10:28342200-28345000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:28342400-28342600	Enhancers	Stomach Smooth Muscle	stomach
27	chr10:28342400-28342600	Weak transcription	HSMMtube	muscle
28	chr10:28342400-28342800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:28342400-28343000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:28342400-28343000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:28342400-28343200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:28342400-28343400	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:28342400-28344000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:28342400-28344200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:28342400-28344600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:28342400-28344600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:28342400-28345000	Enhancers	Hela-S3	cervix
38	chr10:28342400-28348400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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