Variant report

Variant	rs55688756
Chromosome Location	chr3:133698191-133698192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133696142..133700134-chr3:133702355..133707029,6	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55947930	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56862171	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61106283	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72980349	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73861271	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73861291	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73861293	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133664800-133713000	Weak transcription	Gastric	stomach
3	chr3:133675400-133698800	Weak transcription	Right Ventricle	heart
4	chr3:133682800-133699000	Weak transcription	Stomach Mucosa	stomach
5	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
6	chr3:133692600-133698200	Weak transcription	Right Atrium	heart
7	chr3:133692600-133699400	Weak transcription	Adipose Nuclei	Adipose
8	chr3:133693000-133698200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:133694400-133699200	Enhancers	Fetal Thymus	thymus
10	chr3:133694600-133703800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:133695600-133698800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:133695800-133705400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:133696000-133698200	Strong transcription	Placenta	Placenta
14	chr3:133696000-133709400	Weak transcription	Esophagus	oesophagus
15	chr3:133696400-133698400	Strong transcription	Fetal Stomach	stomach
16	chr3:133696400-133699800	Enhancers	HUVEC	blood vessel
17	chr3:133696600-133699000	Genic enhancers	Lung	lung
18	chr3:133696600-133700200	Enhancers	Left Ventricle	heart
19	chr3:133696800-133699600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr3:133697000-133699800	Enhancers	Spleen	Spleen
21	chr3:133697200-133698400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:133697200-133700200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr3:133697600-133698600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr3:133697600-133700000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:133698000-133698600	Enhancers	Primary hematopoietic stem cells	blood
26	chr3:133698000-133698600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr3:133698000-133699000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:133698000-133699000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:133698000-133699200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links