Variant report

Variant	rs73861271
Chromosome Location	chr3:133679848-133679849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133662409..133664357-chr3:133677457..133679955,3	K562	blood:
2	chr3:133678367..133680335-chr3:133754248..133756497,2	MCF-7	breast:
3	chr3:133679126..133681461-chr3:133682913..133685709,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55688756	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55947930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56862171	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61106283	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72980349	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73861291	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73861293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133663800-133694800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:133664800-133713000	Weak transcription	Gastric	stomach
4	chr3:133668400-133685600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133670200-133680200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:133670600-133687000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:133672600-133681400	Weak transcription	Esophagus	oesophagus
8	chr3:133674000-133681400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:133675400-133682200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:133675400-133698800	Weak transcription	Right Ventricle	heart
11	chr3:133676200-133683800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:133676400-133685200	Weak transcription	Right Atrium	heart
13	chr3:133677000-133681400	Weak transcription	HUVEC	blood vessel
14	chr3:133677200-133681200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:133677400-133681400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:133677400-133682200	Weak transcription	Lung	lung
17	chr3:133677600-133682000	Weak transcription	Psoas Muscle	Psoas
18	chr3:133677800-133683400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:133678000-133681400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:133678000-133681600	Weak transcription	HSMM	muscle
21	chr3:133678000-133682000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:133678000-133683400	Weak transcription	Fetal Thymus	thymus
23	chr3:133678400-133681400	Weak transcription	Spleen	Spleen
24	chr3:133679600-133680200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links