The 2.0 version of rSNPBase

Variant report

Variant rs55690318
Chromosome Location chr12:57698920-57698921
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:57654800-57705400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr12:57662800-57706000 Strong transcription Primary monocytes fromperipheralblood blood
3 chr12:57670400-57707000 Strong transcription Monocytes-CD14+_RO01746 blood
4 chr12:57670600-57700000 Strong transcription Fetal Muscle Trunk muscle
5 chr12:57671000-57700000 Strong transcription Liver Liver
6 chr12:57674600-57700000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr12:57674600-57702600 Weak transcription HUVEC blood vessel
8 chr12:57674600-57704400 Strong transcription Primary T regulatory cells fromperipheralblood blood
9 chr12:57674800-57700000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr12:57674800-57701000 Strong transcription Primary T cells from cord blood blood
11 chr12:57675000-57699400 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr12:57675000-57700000 Strong transcription Fetal Thymus thymus
13 chr12:57675000-57701000 Strong transcription Primary T cells fromperipheralblood blood
14 chr12:57675400-57707000 Strong transcription Primary T helper cells fromperipheralblood blood
15 chr12:57676200-57700000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr12:57676200-57700000 Strong transcription Fetal Intestine Large intestine
17 chr12:57677600-57713000 Weak transcription Stomach Mucosa stomach
18 chr12:57678000-57699400 Weak transcription A549 lung
19 chr12:57678000-57713000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr12:57679200-57699800 Strong transcription Rectal Mucosa Donor 29 rectum
21 chr12:57682400-57700200 Strong transcription Duodenum Mucosa Duodenum
22 chr12:57682800-57700200 Strong transcription Primary T helper naive cells fromperipheralblood blood
23 chr12:57684000-57699800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr12:57684200-57699000 Weak transcription Fetal Brain Male brain
25 chr12:57684600-57700200 Strong transcription Primary B cells from cord blood blood
26 chr12:57684800-57700000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
27 chr12:57685400-57700000 Strong transcription Primary B cells from peripheral blood blood
28 chr12:57685400-57700400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr12:57689200-57701800 Weak transcription Brain Substantia Nigra brain
30 chr12:57689200-57703200 Weak transcription Hela-S3 cervix
31 chr12:57689600-57703000 Weak transcription HMEC breast
32 chr12:57690200-57699400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr12:57690400-57703200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr12:57690800-57702600 Weak transcription Muscle Satellite Cultured Cells --
35 chr12:57690800-57705400 Weak transcription Spleen Spleen
36 chr12:57691000-57736200 Weak transcription Right Atrium heart
37 chr12:57692000-57703000 Weak transcription NH-A brain
38 chr12:57692200-57699200 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr12:57693200-57705800 Weak transcription K562 blood
40 chr12:57693600-57743800 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr12:57693800-57701600 Weak transcription Brain Cingulate Gyrus brain
42 chr12:57693800-57702800 Weak transcription NHLF lung
43 chr12:57693800-57705200 Weak transcription Small Intestine intestine
44 chr12:57693800-57713000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr12:57694000-57699000 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr12:57694000-57699400 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr12:57694000-57700000 Strong transcription Fetal Muscle Leg muscle
48 chr12:57694000-57701600 Weak transcription Aorta Aorta
49 chr12:57694000-57702800 Weak transcription Fetal Heart heart
50 chr12:57694000-57703000 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015