Variant report

Variant	rs55691089
Chromosome Location	chr11:72847938-72847939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72844087..72848256-chr11:72851941..72854991,5	MCF-7	breast:
2	chr11:72794791..72796457-chr11:72847518..72849670,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7939736	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72793600-72850600	Weak transcription	NH-A	brain
2	chr11:72806800-72851000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:72811000-72851600	Weak transcription	Pancreas	Pancrea
4	chr11:72822400-72850200	Weak transcription	A549	lung
5	chr11:72823200-72848000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:72823600-72850200	Weak transcription	NHLF	lung
7	chr11:72825400-72851400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:72825600-72851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:72826000-72851600	Weak transcription	Gastric	stomach
10	chr11:72826200-72850800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:72826200-72851200	Weak transcription	Hela-S3	cervix
12	chr11:72826400-72848800	Weak transcription	HSMMtube	muscle
13	chr11:72826400-72850600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:72826400-72850800	Weak transcription	Fetal Brain Male	brain
15	chr11:72826400-72851600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:72826800-72848800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:72828200-72850600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:72830000-72848400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:72832400-72851400	Weak transcription	Psoas Muscle	Psoas
20	chr11:72836200-72851400	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:72836600-72850800	Weak transcription	K562	blood
22	chr11:72836800-72848000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:72836800-72848600	Weak transcription	Right Ventricle	heart
24	chr11:72836800-72850600	Weak transcription	Brain Germinal Matrix	brain
25	chr11:72836800-72851400	Weak transcription	Colonic Mucosa	Colon
26	chr11:72837200-72851400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:72837800-72848600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:72838000-72848400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr11:72838200-72850600	Weak transcription	Right Atrium	heart
30	chr11:72838200-72851400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:72838400-72849400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:72838600-72848200	Weak transcription	Brain Angular Gyrus	brain
33	chr11:72838600-72848200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:72838600-72848600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:72838600-72850400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:72838600-72851000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:72838600-72851000	Weak transcription	Fetal Brain Female	brain
38	chr11:72838800-72848400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:72838800-72850000	Weak transcription	NHDF-Ad	bronchial
40	chr11:72838800-72850200	Weak transcription	Fetal Kidney	kidney
41	chr11:72838800-72850400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:72838800-72850800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:72838800-72850800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:72839600-72848000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:72839800-72848200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:72839800-72850800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:72840000-72850600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr11:72840200-72848000	Strong transcription	Fetal Intestine Small	intestine
49	chr11:72840600-72851600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:72840800-72851400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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