Variant report

Variant	rs7939736
Chromosome Location	chr11:72726292-72726293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72724109..72726917-chr11:72853072..72855247,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55691089	1.00[AMR][1000 genomes]
rs55949049	0.97[AFR][1000 genomes]
rs7933734	1.00[MEX][hapmap]
rs7940683	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72701000-72727200	Weak transcription	HUVEC	blood vessel
2	chr11:72716200-72731200	Weak transcription	Fetal Kidney	kidney
3	chr11:72720000-72731200	Weak transcription	Small Intestine	intestine
4	chr11:72722200-72738600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:72722400-72726400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:72722400-72727000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:72722400-72731000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:72722600-72727200	Weak transcription	Fetal Lung	lung
9	chr11:72722600-72727800	Weak transcription	Liver	Liver
10	chr11:72722600-72728000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:72722600-72728000	Weak transcription	Gastric	stomach
12	chr11:72722600-72728000	Weak transcription	Ovary	ovary
13	chr11:72722600-72728200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr11:72722600-72730600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:72722600-72730600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:72722600-72731000	Weak transcription	Brain Germinal Matrix	brain
17	chr11:72722600-72738800	Weak transcription	Aorta	Aorta
18	chr11:72722600-72743600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:72722600-72746400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:72722800-72727600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:72722800-72727600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:72722800-72727800	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:72722800-72729200	Weak transcription	Spleen	Spleen
24	chr11:72722800-72730000	Weak transcription	HSMMtube	muscle
25	chr11:72722800-72731000	Weak transcription	Fetal Intestine Large	intestine
26	chr11:72722800-72731400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:72722800-72737800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr11:72722800-72738600	Weak transcription	Fetal Stomach	stomach
29	chr11:72722800-72738600	Weak transcription	Fetal Thymus	thymus
30	chr11:72722800-72738600	Weak transcription	Left Ventricle	heart
31	chr11:72722800-72738800	Weak transcription	Thymus	Thymus
32	chr11:72723000-72730200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:72723000-72731000	Weak transcription	Fetal Intestine Small	intestine
34	chr11:72723000-72734600	Weak transcription	Primary T cells from cord blood	blood
35	chr11:72723000-72735400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:72723000-72737800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:72723000-72739000	Weak transcription	Right Ventricle	heart
38	chr11:72723200-72730200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:72723600-72738000	Weak transcription	NHLF	lung
40	chr11:72724000-72727400	Weak transcription	NHDF-Ad	bronchial
41	chr11:72724000-72728600	Strong transcription	Primary B cells from cord blood	blood
42	chr11:72724400-72727400	Weak transcription	Brain Anterior Caudate	brain
43	chr11:72724400-72727600	Weak transcription	Brain Substantia Nigra	brain
44	chr11:72724400-72731000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:72724400-72734800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:72724400-72739200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:72724400-72761000	Weak transcription	HSMM	muscle
48	chr11:72724600-72727400	Weak transcription	Brain Angular Gyrus	brain
49	chr11:72724600-72727400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:72724600-72730600	Weak transcription	HepG2	liver

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