Variant report

Variant	rs556927787
Chromosome Location	chr15:58000209-58000210
allele	-/AAAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57957919..57960382-chr15:58000140..58002579,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3415316	chr15:57999115-58000931	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57998200-58000600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:57998200-58001000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:57998200-58001400	Active TSS	Fetal Kidney	kidney
4	chr15:57998400-58000800	Active TSS	Aorta	Aorta
5	chr15:57998400-58000800	Active TSS	Right Atrium	heart
6	chr15:57998400-58000800	Active TSS	Right Ventricle	heart
7	chr15:57998600-58000400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr15:57998600-58000400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr15:57998600-58000400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:57998600-58000400	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr15:57998600-58000400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:57998600-58000400	Active TSS	Fetal Intestine Large	intestine
13	chr15:57998600-58000600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:57998600-58000600	Active TSS	Fetal Intestine Small	intestine
15	chr15:57998600-58000600	Active TSS	Left Ventricle	heart
16	chr15:57998600-58000600	Active TSS	HSMM	muscle
17	chr15:57998600-58000800	Active TSS	Psoas Muscle	Psoas
18	chr15:57998600-58000800	Active TSS	Stomach Smooth Muscle	stomach
19	chr15:57998800-58000400	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr15:57998800-58000600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:57999600-58000400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:57999600-58000400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:57999600-58000400	Flanking Active TSS	Fetal Brain Female	brain
24	chr15:57999600-58000600	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr15:57999600-58000600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr15:57999600-58000600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:57999600-58000600	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr15:57999600-58001000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:57999600-58001200	Weak transcription	Spleen	Spleen
30	chr15:57999600-58001400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:57999800-58000400	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr15:57999800-58000400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr15:57999800-58000400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr15:57999800-58000400	Flanking Active TSS	Osteobl	bone
35	chr15:57999800-58000600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:57999800-58000600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr15:57999800-58000600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr15:57999800-58000600	Flanking Active TSS	Rectal Smooth Muscle	rectum
39	chr15:57999800-58000600	Flanking Active TSS	A549	lung
40	chr15:57999800-58000600	Flanking Active TSS	Hela-S3	cervix
41	chr15:57999800-58000800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:57999800-58000800	Enhancers	Primary B cells from peripheral blood	blood
43	chr15:57999800-58000800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr15:57999800-58000800	Transcr. at gene 5' and 3'	Dnd41	blood
45	chr15:57999800-58000800	Flanking Active TSS	HUVEC	blood vessel
46	chr15:57999800-58000800	Flanking Active TSS	NHEK	skin
47	chr15:57999800-58001200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:57999800-58001200	Weak transcription	Lung	lung
49	chr15:57999800-58001200	Weak transcription	Pancreas	Pancrea
50	chr15:57999800-58001600	Weak transcription	Placenta	Placenta

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