Variant report

Variant	rs55695552
Chromosome Location	chr7:103670051-103670052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10256884	0.89[EUR][1000 genomes]
rs10261266	0.89[EUR][1000 genomes]
rs10480652	0.89[EUR][1000 genomes]
rs10953402	0.90[EUR][1000 genomes]
rs11971200	0.92[EUR][1000 genomes]
rs1858812	0.89[EUR][1000 genomes]
rs4727586	0.90[EUR][1000 genomes]
rs4729948	0.89[EUR][1000 genomes]
rs4729950	0.89[EUR][1000 genomes]
rs4729951	0.90[EUR][1000 genomes]
rs4729952	0.90[EUR][1000 genomes]
rs4729953	0.90[EUR][1000 genomes]
rs56325675	0.90[EUR][1000 genomes]
rs59700255	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60297107	0.92[EUR][1000 genomes]
rs756744	0.89[EUR][1000 genomes]
rs7798617	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018253	chr7:103669491-103731850	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103669600-103670800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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