Variant report

Variant	rs55701841
Chromosome Location	chr10:1121381-1121382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:1100725..1104850-chr10:1118585..1122154,6	K562	blood:
2	chr10:1093376..1095260-chr10:1119342..1122305,3	MCF-7	breast:
3	chr10:1100859..1106350-chr10:1117983..1126025,11	MCF-7	breast:
4	chr10:975582..978698-chr10:1119494..1122267,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107929	Chromatin interaction
ENSG00000047056	Chromatin interaction
ENSG00000067064	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10159718	0.83[ASN][1000 genomes]
rs10794715	0.99[ASN][1000 genomes]
rs10794718	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10903361	0.98[ASN][1000 genomes]
rs10903362	0.89[ASN][1000 genomes]
rs10903365	0.82[ASN][1000 genomes]
rs10903366	0.83[ASN][1000 genomes]
rs11250245	0.90[ASN][1000 genomes]
rs11250256	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11250258	0.84[ASN][1000 genomes]
rs11250260	0.92[EUR][1000 genomes]
rs12569814	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12784270	0.92[EUR][1000 genomes]
rs2101050	0.96[ASN][1000 genomes]
rs2127605	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34766854	0.91[ASN][1000 genomes]
rs3793774	0.92[EUR][1000 genomes]
rs3816735	0.92[EUR][1000 genomes]
rs4519019	1.00[ASN][1000 genomes]
rs67388830	0.82[ASN][1000 genomes]
rs7074721	0.99[ASN][1000 genomes]
rs7075662	0.91[ASN][1000 genomes]
rs7076083	0.90[ASN][1000 genomes]
rs7084283	0.99[ASN][1000 genomes]
rs7087381	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
3	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
11	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1048254	chr10:1016006-1146595	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
16	nsv1040178	chr10:1024910-1126104	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	nsv540410	chr10:1024910-1126104	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
19	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
20	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
21	nsv894725	chr10:1110464-1421516	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
22	nsv1054432	chr10:1115626-1230431	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
23	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1104400-1125800	Weak transcription	A549	lung
2	chr10:1104600-1124400	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:1104800-1125200	Weak transcription	K562	blood
4	chr10:1104800-1125800	Weak transcription	Fetal Brain Male	brain
5	chr10:1108600-1142400	Weak transcription	Stomach Mucosa	stomach
6	chr10:1108600-1144600	Weak transcription	Fetal Heart	heart
7	chr10:1110000-1125800	Weak transcription	Brain Substantia Nigra	brain
8	chr10:1110400-1124200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:1110600-1126000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:1111800-1124800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:1112000-1125800	Weak transcription	HUVEC	blood vessel
12	chr10:1114200-1132200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:1116200-1124400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:1117000-1121600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:1117000-1121800	Strong transcription	Dnd41	blood
16	chr10:1117200-1124400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:1117200-1126000	Weak transcription	Small Intestine	intestine
18	chr10:1117200-1130800	Weak transcription	Right Atrium	heart
19	chr10:1117200-1138600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:1117400-1123800	Weak transcription	NH-A	brain
21	chr10:1117400-1126000	Weak transcription	Hela-S3	cervix
22	chr10:1117400-1129800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:1117400-1141400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:1117600-1121800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:1117800-1168600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:1118000-1121600	Strong transcription	Primary B cells from cord blood	blood
27	chr10:1118000-1121600	Strong transcription	Fetal Intestine Large	intestine
28	chr10:1118000-1121600	Strong transcription	Fetal Muscle Leg	muscle
29	chr10:1118000-1121800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr10:1118000-1121800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:1118000-1121800	Strong transcription	Thymus	Thymus
32	chr10:1118000-1122000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:1118000-1122400	Strong transcription	Fetal Intestine Small	intestine
34	chr10:1118000-1123400	Strong transcription	Fetal Stomach	stomach
35	chr10:1118000-1126600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:1118000-1127000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:1118000-1127200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr10:1118000-1156400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:1118000-1168400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:1118000-1173800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:1118200-1129000	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr10:1118400-1128000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:1118800-1124200	Weak transcription	HepG2	liver
44	chr10:1119200-1132200	Weak transcription	Fetal Kidney	kidney
45	chr10:1119600-1121600	Strong transcription	Brain Cingulate Gyrus	brain
46	chr10:1119600-1121800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:1119600-1131400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr10:1119800-1123400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr10:1119800-1123400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:1119800-1124400	Weak transcription	Primary hematopoietic stem cells	blood

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