Variant report

Variant	rs55702628
Chromosome Location	chr15:57463886-57463887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57463088..57465756-chr15:57508585..57510347,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1020888	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16977246	0.83[AFR][1000 genomes]
rs16977269	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1841692	0.85[AFR][1000 genomes]
rs2011551	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2593246	0.83[ASN][1000 genomes]
rs2615243	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4774911	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4774912	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56821483	0.83[AFR][1000 genomes]
rs58388376	0.85[AFR][1000 genomes]
rs59239112	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59799036	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6493902	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6493904	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7180911	0.85[AFR][1000 genomes]
rs73415456	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8040557	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3405749	chr15:57462060-57463958	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57439400-57491600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr15:57444400-57485600	Weak transcription	Placenta	Placenta
3	chr15:57444400-57507400	Weak transcription	K562	blood
4	chr15:57444600-57490200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr15:57444800-57484200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:57444800-57484200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:57445200-57466000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:57445400-57478400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:57446000-57468400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:57447000-57484600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:57447800-57466000	Weak transcription	Pancreas	Pancrea
12	chr15:57448000-57465600	Weak transcription	Right Ventricle	heart
13	chr15:57448000-57483800	Weak transcription	Lung	lung
14	chr15:57450800-57469000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:57450800-57491000	Weak transcription	Left Ventricle	heart
16	chr15:57451000-57464400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:57451000-57477400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:57451000-57487800	Weak transcription	Psoas Muscle	Psoas
19	chr15:57451000-57490800	Weak transcription	NHEK	skin
20	chr15:57451200-57470200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:57451200-57475000	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:57451200-57475400	Weak transcription	Adipose Nuclei	Adipose
23	chr15:57451200-57478600	Weak transcription	HMEC	breast
24	chr15:57451200-57484200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:57451200-57484200	Weak transcription	Esophagus	oesophagus
26	chr15:57451200-57490400	Weak transcription	Ovary	ovary
27	chr15:57451600-57491200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:57451800-57478400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:57452200-57481600	Weak transcription	Fetal Heart	heart
30	chr15:57452400-57465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:57452400-57475400	Weak transcription	Fetal Lung	lung
32	chr15:57452400-57490400	Weak transcription	Fetal Brain Female	brain
33	chr15:57452800-57470800	Weak transcription	Brain Anterior Caudate	brain
34	chr15:57453400-57464600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:57453400-57465200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:57453800-57485400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr15:57453800-57524600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:57454000-57465000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:57454000-57465000	Weak transcription	NHDF-Ad	bronchial
40	chr15:57457200-57499400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:57457400-57478400	Weak transcription	Fetal Muscle Leg	muscle
42	chr15:57458000-57464200	Strong transcription	Dnd41	blood
43	chr15:57458200-57505200	Strong transcription	Fetal Thymus	thymus
44	chr15:57458600-57468600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:57458800-57464000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:57458800-57475000	Weak transcription	Osteobl	bone
47	chr15:57458800-57475600	Weak transcription	HUVEC	blood vessel
48	chr15:57459200-57488600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:57459200-57492600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr15:57459400-57468600	Weak transcription	HSMM	muscle

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