The 2.0 version of rSNPBase

Variant report

Variant rs55706573
Chromosome Location chr1:85312620-85312621
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85289400-85330800 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr1:85296600-85312800 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr1:85304000-85313200 Weak transcription Gastric stomach
4 chr1:85305800-85313000 Weak transcription Left Ventricle heart
5 chr1:85305800-85313000 Weak transcription Pancreas Pancrea
6 chr1:85306200-85316000 Enhancers Fetal Heart heart
7 chr1:85308000-85312800 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr1:85309000-85312800 Weak transcription Colon Smooth Muscle Colon
9 chr1:85309000-85313000 Weak transcription Right Atrium heart
10 chr1:85309000-85313000 Weak transcription Right Ventricle heart
11 chr1:85309200-85312800 Weak transcription Stomach Mucosa stomach
12 chr1:85309600-85313400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr1:85310000-85313000 Weak transcription Esophagus oesophagus
14 chr1:85310200-85312800 Weak transcription Fetal Stomach stomach
15 chr1:85311400-85313800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:85311600-85313800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:85311600-85313800 Enhancers Liver Liver
18 chr1:85311600-85314600 Enhancers Breast Myoepithelial Primary Cells Breast
19 chr1:85311600-85317600 Enhancers HMEC breast
20 chr1:85311800-85313600 Enhancers NHEK skin
21 chr1:85311800-85313800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:85312000-85313600 Enhancers Cortex derived primary cultured neurospheres brain
23 chr1:85312000-85313800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:85312000-85314200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
25 chr1:85312200-85313200 Enhancers Osteobl bone
26 chr1:85312200-85313800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:85312200-85313800 Enhancers NHDF-Ad bronchial
28 chr1:85312200-85314000 Enhancers Fetal Lung lung
29 chr1:85312200-85314000 Enhancers Sigmoid Colon Sigmoid Colon
30 chr1:85312200-85314200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:85312400-85312800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:85312400-85312800 Weak transcription Stomach Smooth Muscle stomach
33 chr1:85312600-85313200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:85312600-85313600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:85312600-85313600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
36 chr1:85312600-85313600 Enhancers Primary T helper naive cells from peripheral blood blood
37 chr1:85312600-85313600 Enhancers Primary T killer memory cells from peripheral blood blood
38 chr1:85312600-85313600 Enhancers Brain Hippocampus Middle brain
39 chr1:85312600-85313600 Enhancers HSMMtube muscle
40 chr1:85312600-85313800 Enhancers Primary T helper 17 cells PMA-I stimulated --
41 chr1:85312600-85313800 Enhancers Muscle Satellite Cultured Cells --
42 chr1:85312600-85313800 Enhancers Hela-S3 cervix
43 chr1:85312600-85314000 Enhancers Brain Cingulate Gyrus brain
44 chr1:85312600-85314400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:85312600-85314400 Enhancers Primary hematopoietic stem cells short term culture blood
46 chr1:85312600-85314600 Enhancers Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015