The 2.0 version of rSNPBase

Variant report

Variant rs55896911
Chromosome Location chr1:85315986-85315987
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85289400-85330800 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr1:85306200-85316000 Enhancers Fetal Heart heart
3 chr1:85311600-85317600 Enhancers HMEC breast
4 chr1:85313000-85332800 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr1:85313400-85319200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:85313400-85320400 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr1:85313600-85317200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr1:85313600-85317400 Weak transcription HSMMtube muscle
9 chr1:85313600-85330600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr1:85313600-85357200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr1:85313800-85316400 Weak transcription NHLF lung
12 chr1:85313800-85316600 Weak transcription NHDF-Ad bronchial
13 chr1:85313800-85317000 Weak transcription Lung lung
14 chr1:85313800-85317000 Weak transcription Hela-S3 cervix
15 chr1:85313800-85317200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr1:85313800-85317200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr1:85313800-85317200 Weak transcription Muscle Satellite Cultured Cells --
18 chr1:85313800-85317200 Weak transcription NH-A brain
19 chr1:85313800-85319000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr1:85313800-85319000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr1:85314000-85316400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:85314000-85317400 Weak transcription Esophagus oesophagus
23 chr1:85314000-85319000 Weak transcription Primary T helper cells PMA-I stimulated --
24 chr1:85314000-85319000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:85314000-85319000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr1:85314000-85319200 Weak transcription Primary hematopoietic stem cells blood
27 chr1:85314000-85319200 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:85314000-85330400 Weak transcription Pancreas Pancrea
29 chr1:85314200-85317000 Weak transcription Osteobl bone
30 chr1:85314200-85319600 Weak transcription Stomach Mucosa stomach
31 chr1:85314400-85316600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:85314400-85319000 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr1:85314400-85319200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:85314400-85320400 Weak transcription Left Ventricle heart
35 chr1:85314600-85316000 Weak transcription NHEK skin
36 chr1:85314600-85319200 Weak transcription Colonic Mucosa Colon
37 chr1:85314600-85328400 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr1:85315000-85318600 Enhancers Placenta Amnion Placenta Amnion
39 chr1:85315200-85316800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:85315200-85322000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
41 chr1:85315400-85316600 Enhancers Fetal Intestine Large intestine
42 chr1:85315400-85316800 ZNF genes & repeats Fetal Intestine Small intestine
43 chr1:85315400-85317000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:85315600-85317000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:85315600-85317600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:85315600-85336400 Weak transcription Right Ventricle heart
47 chr1:85315800-85316800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015