Variant report

Variant	rs55706802
Chromosome Location	chr15:78620289-78620290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62010361	0.87[AFR][1000 genomes]
rs8040826	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8041135	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78614800-78621800	Weak transcription	Spleen	Spleen
2	chr15:78616000-78621400	Weak transcription	HUVEC	blood vessel
3	chr15:78617400-78623600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:78617600-78623800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:78618000-78623000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:78618000-78623600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:78618200-78622600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:78618200-78622600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:78618200-78623600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:78618200-78623600	Weak transcription	Fetal Intestine Large	intestine
11	chr15:78618200-78623600	Weak transcription	Fetal Intestine Small	intestine
12	chr15:78618200-78633400	Weak transcription	Right Atrium	heart
13	chr15:78618400-78622000	Weak transcription	Hela-S3	cervix
14	chr15:78619600-78620400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:78619600-78620400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:78619600-78620400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:78619600-78620400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:78619800-78620400	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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