Variant report

Variant	rs55707653
Chromosome Location	chr8:66529702-66529703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66521490..66523695-chr8:66527436..66529828,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10087361	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10089029	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12677419	0.85[AMR][1000 genomes]
rs12678467	0.81[AMR][1000 genomes]
rs1473601	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16932314	0.82[AMR][1000 genomes]
rs1877638	0.82[AMR][1000 genomes]
rs2175809	0.85[AMR][1000 genomes]
rs28576524	0.85[AMR][1000 genomes]
rs28613797	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73236986	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73239011	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73239085	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66504000-66545200	Weak transcription	Fetal Brain Male	brain
2	chr8:66506800-66545200	Weak transcription	Stomach Mucosa	stomach
3	chr8:66507800-66538000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:66508000-66545200	Weak transcription	Fetal Heart	heart
5	chr8:66514600-66539200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:66517000-66533200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:66517000-66538400	Weak transcription	Small Intestine	intestine
8	chr8:66517200-66532200	Weak transcription	Esophagus	oesophagus
9	chr8:66517200-66533800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:66517200-66539000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:66517400-66529800	Weak transcription	Hela-S3	cervix
12	chr8:66518000-66545600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:66519600-66545200	Weak transcription	Right Atrium	heart
14	chr8:66520000-66531600	Weak transcription	K562	blood
15	chr8:66520000-66545000	Weak transcription	NHEK	skin
16	chr8:66520400-66539600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:66521600-66533200	Weak transcription	HMEC	breast
18	chr8:66522000-66531000	Weak transcription	Aorta	Aorta
19	chr8:66522200-66535200	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:66522400-66531600	Weak transcription	Colonic Mucosa	Colon
21	chr8:66522600-66531400	Weak transcription	Right Ventricle	heart
22	chr8:66522600-66545200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:66523600-66531200	Weak transcription	HepG2	liver
24	chr8:66524800-66530800	Weak transcription	A549	lung
25	chr8:66524800-66538400	Weak transcription	Psoas Muscle	Psoas
26	chr8:66525000-66530600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr8:66525000-66531000	Weak transcription	HSMMtube	muscle
28	chr8:66525000-66531200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr8:66525000-66531200	Weak transcription	Brain Angular Gyrus	brain
30	chr8:66525000-66531200	Weak transcription	Spleen	Spleen
31	chr8:66525600-66529800	Weak transcription	Fetal Brain Female	brain
32	chr8:66525600-66529800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr8:66525600-66531200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:66525600-66531600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:66525600-66533000	Weak transcription	Primary B cells from cord blood	blood
36	chr8:66525600-66533800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr8:66525600-66533800	Weak transcription	Pancreas	Pancrea
38	chr8:66525600-66545200	Weak transcription	Fetal Kidney	kidney
39	chr8:66525800-66530000	Weak transcription	Osteobl	bone
40	chr8:66525800-66530800	Weak transcription	Colon Smooth Muscle	Colon
41	chr8:66525800-66531400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr8:66526000-66529800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:66526000-66530000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr8:66526000-66531000	Weak transcription	Brain Hippocampus Middle	brain
45	chr8:66526000-66533000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr8:66526000-66533200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:66526000-66537000	Weak transcription	Gastric	stomach
48	chr8:66526000-66539000	Weak transcription	NHLF	lung
49	chr8:66526200-66530800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr8:66526200-66530800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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