Variant report

Variant	rs10087361
Chromosome Location	chr8:66545554-66545555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66543785..66546210-chr8:66562044..66563717,2	K562	blood:
2	chr8:66544310..66548208-chr8:66554670..66559350,8	MCF-7	breast:
3	chr8:66543941..66549000-chr8:66554498..66559366,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066855	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10089029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089708	0.86[ASN][1000 genomes]
rs10092109	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10097461	0.99[ASN][1000 genomes]
rs10100131	0.80[ASN][1000 genomes]
rs10110985	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10216810	0.88[CEU][hapmap]
rs1053085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1053087	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1053088	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10957361	1.00[ASN][1000 genomes]
rs11776709	0.90[ASN][1000 genomes]
rs11776712	0.91[ASN][1000 genomes]
rs11985628	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11990855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12335006	0.99[ASN][1000 genomes]
rs12335276	1.00[ASN][1000 genomes]
rs12542226	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs12543053	0.98[ASN][1000 genomes]
rs12544767	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12677419	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12678467	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12680947	0.89[EUR][1000 genomes]
rs13252358	0.89[ASN][1000 genomes]
rs13266834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13267942	0.97[ASN][1000 genomes]
rs13268343	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs13281155	0.99[ASN][1000 genomes]
rs14213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1473601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533285	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16932245	0.99[ASN][1000 genomes]
rs16932250	0.99[ASN][1000 genomes]
rs16932314	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1877638	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1877641	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs2048650	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2102648	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175809	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2175810	0.86[ASN][1000 genomes]
rs2357476	0.85[ASN][1000 genomes]
rs28415299	0.95[ASN][1000 genomes]
rs28576524	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28613797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3268	0.99[ASN][1000 genomes]
rs34226237	0.99[ASN][1000 genomes]
rs34494846	0.99[ASN][1000 genomes]
rs34533611	0.97[ASN][1000 genomes]
rs34851482	0.98[ASN][1000 genomes]
rs35038843	0.99[ASN][1000 genomes]
rs35790435	0.97[ASN][1000 genomes]
rs35941313	0.97[ASN][1000 genomes]
rs3750184	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3765205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3812412	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4275254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4320587	0.97[ASN][1000 genomes]
rs4384016	0.81[ASN][1000 genomes]
rs4384017	0.84[ASN][1000 genomes]
rs4388482	0.97[ASN][1000 genomes]
rs4397444	0.99[ASN][1000 genomes]
rs4637885	0.97[ASN][1000 genomes]
rs4637886	0.97[ASN][1000 genomes]
rs4737222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4737747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4737748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4737749	1.00[ASN][1000 genomes]
rs4737750	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5018458	0.99[ASN][1000 genomes]
rs55707653	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57419568	0.99[ASN][1000 genomes]
rs60023200	0.92[ASN][1000 genomes]
rs60058315	0.99[ASN][1000 genomes]
rs6472210	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs6472213	0.99[ASN][1000 genomes]
rs6472214	0.88[ASN][1000 genomes]
rs6472215	0.99[ASN][1000 genomes]
rs6472216	0.98[ASN][1000 genomes]
rs6472217	0.99[ASN][1000 genomes]
rs6472218	1.00[ASN][1000 genomes]
rs66467166	0.85[ASN][1000 genomes]
rs66486920	0.92[ASN][1000 genomes]
rs67046768	0.92[ASN][1000 genomes]
rs67131486	0.95[ASN][1000 genomes]
rs67685675	0.92[ASN][1000 genomes]
rs6985897	0.90[ASN][1000 genomes]
rs6985932	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6986691	1.00[ASN][1000 genomes]
rs6991731	0.86[ASN][1000 genomes]
rs6993876	0.99[ASN][1000 genomes]
rs6994213	0.99[ASN][1000 genomes]
rs6995242	0.99[ASN][1000 genomes]
rs6997959	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7006261	1.00[ASN][1000 genomes]
rs7006648	0.93[ASN][1000 genomes]
rs7007505	1.00[ASN][1000 genomes]
rs7011464	0.88[CHB][hapmap]
rs7012578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7012856	1.00[ASN][1000 genomes]
rs7016472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71930161	1.00[ASN][1000 genomes]
rs73236948	0.99[ASN][1000 genomes]
rs73236986	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239085	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7459737	0.95[ASN][1000 genomes]
rs7464123	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7464223	0.95[ASN][1000 genomes]
rs7812390	0.99[ASN][1000 genomes]
rs7812446	0.99[ASN][1000 genomes]
rs7814841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7815488	0.99[ASN][1000 genomes]
rs7817112	0.97[ASN][1000 genomes]
rs7823840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7832407	1.00[ASN][1000 genomes]
rs7835313	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7836349	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7836746	0.99[ASN][1000 genomes]
rs7841652	0.97[ASN][1000 genomes]
rs7842162	0.86[ASN][1000 genomes]
rs7846527	0.97[ASN][1000 genomes]
rs953593	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66518000-66545600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:66532000-66545600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:66532400-66545600	Weak transcription	Aorta	Aorta
4	chr8:66535200-66545600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:66539600-66545600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:66544200-66545600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr8:66544600-66545600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:66544600-66545600	Enhancers	Placenta	Placenta
9	chr8:66544800-66545600	Enhancers	Primary B cells from peripheral blood	blood
10	chr8:66544800-66545600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:66544800-66545600	Enhancers	Lung	lung
12	chr8:66544800-66545600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr8:66544800-66546000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr8:66544800-66546000	Flanking Active TSS	Dnd41	blood
15	chr8:66545000-66545600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:66545000-66545600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:66545000-66545600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:66545000-66545600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr8:66545000-66545600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr8:66545000-66545600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr8:66545000-66545600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:66545000-66545600	Flanking Active TSS	GM12878-XiMat	blood
23	chr8:66545000-66545800	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr8:66545000-66545800	Flanking Active TSS	HMEC	breast
25	chr8:66545000-66546000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:66545000-66546000	Flanking Active TSS	Liver	Liver
27	chr8:66545000-66546000	Enhancers	Spleen	Spleen
28	chr8:66545000-66546200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:66545000-66547600	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr8:66545000-66547600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:66545200-66545600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr8:66545200-66545600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:66545200-66545600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr8:66545200-66545600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr8:66545200-66545600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr8:66545200-66545600	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr8:66545200-66545600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr8:66545200-66545600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr8:66545200-66545600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr8:66545200-66545600	Flanking Active TSS	Fetal Intestine Small	intestine
41	chr8:66545200-66545600	Enhancers	Gastric	stomach
42	chr8:66545200-66545600	Enhancers	Left Ventricle	heart
43	chr8:66545200-66545600	Enhancers	Ovary	ovary
44	chr8:66545200-66545600	Enhancers	Pancreas	Pancrea
45	chr8:66545200-66545600	Enhancers	Right Ventricle	heart
46	chr8:66545200-66545600	Enhancers	Small Intestine	intestine
47	chr8:66545200-66545600	Enhancers	Stomach Mucosa	stomach
48	chr8:66545200-66545600	Enhancers	Thymus	Thymus
49	chr8:66545200-66545600	Flanking Active TSS	A549	lung
50	chr8:66545200-66545600	Flanking Active TSS	HSMM	muscle

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