Variant report

Variant	rs7464123
Chromosome Location	chr8:66491543-66491544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10087361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10088623	0.83[GIH][hapmap]
rs10089029	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10092109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10097461	0.92[ASN][1000 genomes]
rs10110985	0.80[AMR][1000 genomes]
rs10216810	0.88[CEU][hapmap]
rs1053085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1053087	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1053088	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10957361	0.92[ASN][1000 genomes]
rs11776709	0.84[ASN][1000 genomes]
rs11776712	0.85[ASN][1000 genomes]
rs11985628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11990855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11991758	0.83[GIH][hapmap];0.81[MEX][hapmap]
rs12335006	0.91[ASN][1000 genomes]
rs12335276	0.92[ASN][1000 genomes]
rs12542226	0.88[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs12543053	0.90[ASN][1000 genomes]
rs12544767	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12677419	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12677891	0.83[GIH][hapmap];0.80[MEX][hapmap]
rs12678467	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13252358	0.82[ASN][1000 genomes]
rs13266834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13267942	0.90[ASN][1000 genomes]
rs13268343	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13281155	0.92[ASN][1000 genomes]
rs14213	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1473601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1533285	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16932245	0.94[ASN][1000 genomes]
rs16932250	0.94[ASN][1000 genomes]
rs16932314	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1877638	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1877641	0.88[CEU][hapmap]
rs2048650	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2102648	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2175809	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28415299	0.89[ASN][1000 genomes]
rs28576524	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28613797	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3268	0.94[ASN][1000 genomes]
rs34226237	0.94[ASN][1000 genomes]
rs34494846	0.94[ASN][1000 genomes]
rs34533611	0.92[ASN][1000 genomes]
rs34851482	0.93[ASN][1000 genomes]
rs35038843	0.94[ASN][1000 genomes]
rs35790435	0.95[ASN][1000 genomes]
rs35941313	0.95[ASN][1000 genomes]
rs3750184	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3765205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3812412	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4275254	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4320587	0.95[ASN][1000 genomes]
rs4388482	0.95[ASN][1000 genomes]
rs4397444	0.94[ASN][1000 genomes]
rs4637885	0.94[ASN][1000 genomes]
rs4637886	0.90[ASN][1000 genomes]
rs4737222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4737747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4737748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4737749	0.92[ASN][1000 genomes]
rs4737750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs5018458	0.91[ASN][1000 genomes]
rs57419568	0.94[ASN][1000 genomes]
rs60023200	1.00[ASN][1000 genomes]
rs60058315	0.94[ASN][1000 genomes]
rs6472210	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs6472213	0.94[ASN][1000 genomes]
rs6472214	0.82[ASN][1000 genomes]
rs6472215	0.92[ASN][1000 genomes]
rs6472216	0.90[ASN][1000 genomes]
rs6472217	0.92[ASN][1000 genomes]
rs6472218	0.92[ASN][1000 genomes]
rs66467166	0.92[ASN][1000 genomes]
rs66486920	1.00[ASN][1000 genomes]
rs67046768	1.00[ASN][1000 genomes]
rs67131486	0.90[ASN][1000 genomes]
rs67685675	1.00[ASN][1000 genomes]
rs6985897	0.83[ASN][1000 genomes]
rs6985932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6986691	0.92[ASN][1000 genomes]
rs6993876	0.94[ASN][1000 genomes]
rs6994213	0.94[ASN][1000 genomes]
rs6995242	0.94[ASN][1000 genomes]
rs6997959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7006261	0.92[ASN][1000 genomes]
rs7006648	0.85[ASN][1000 genomes]
rs7007505	0.92[ASN][1000 genomes]
rs7011464	0.87[CHB][hapmap]
rs7012578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7012856	0.92[ASN][1000 genomes]
rs7016472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71930161	0.92[ASN][1000 genomes]
rs73236948	0.94[ASN][1000 genomes]
rs73236986	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73239011	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73239085	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7459737	0.90[ASN][1000 genomes]
rs7464223	0.90[ASN][1000 genomes]
rs7812390	0.94[ASN][1000 genomes]
rs7812446	0.94[ASN][1000 genomes]
rs7814841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7815488	0.92[ASN][1000 genomes]
rs7817112	0.89[ASN][1000 genomes]
rs7823840	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7832407	0.92[ASN][1000 genomes]
rs7835313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7836349	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7836746	0.94[ASN][1000 genomes]
rs7841652	0.92[ASN][1000 genomes]
rs7846527	0.95[ASN][1000 genomes]
rs953593	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7464123	ARMC1	cis	lymphoblastoid	seeQTL
rs7464123	CXCL9	trans	brain	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66489200-66491600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:66491000-66491600	Weak transcription	Thymus	Thymus
3	chr8:66491000-66491800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:66491200-66491800	ZNF genes & repeats	Spleen	Spleen
5	chr8:66491200-66492000	ZNF genes & repeats	Lung	lung
6	chr8:66491200-66492000	ZNF genes & repeats	Pancreas	Pancrea
7	chr8:66491400-66491800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:66491400-66505800	Weak transcription	Fetal Stomach	stomach

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