Variant report

Variant	rs12677891
Chromosome Location	chr8:66657050-66657051
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66655738..66658089-chr8:66662818..66664442,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088623	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10096256	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10216810	0.91[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs10808747	0.81[ASN][1000 genomes]
rs1122353	0.89[ASN][1000 genomes]
rs1122354	0.87[ASN][1000 genomes]
rs11990855	0.83[GIH][hapmap]
rs11991758	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12542226	0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap];0.90[ASN][1000 genomes]
rs12678193	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12678467	0.85[GIH][hapmap];0.81[MEX][hapmap];0.82[YRI][hapmap]
rs12680705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1473601	0.83[GIH][hapmap];0.81[MEX][hapmap]
rs1877641	0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs28576524	0.85[GIH][hapmap]
rs4236944	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58130108	0.84[ASN][1000 genomes]
rs60589458	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7016472	0.83[GIH][hapmap];0.81[MEX][hapmap]
rs953593	0.81[GIH][hapmap]
rs999305	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12677891	MTFR1	cis	parietal	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
5	chr8:66628200-66660000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:66628200-66660200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:66628400-66663800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr8:66628400-66666600	Strong transcription	Dnd41	blood
9	chr8:66635200-66674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:66635400-66673600	Weak transcription	Brain Substantia Nigra	brain
11	chr8:66635400-66673800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:66635400-66674000	Weak transcription	Fetal Brain Male	brain
13	chr8:66641800-66660000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:66645600-66686000	Weak transcription	HSMM	muscle
15	chr8:66646800-66664400	Weak transcription	Osteobl	bone
16	chr8:66646800-66670200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:66647000-66658800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:66647200-66657200	Weak transcription	NHDF-Ad	bronchial
19	chr8:66647400-66664600	Weak transcription	Brain Germinal Matrix	brain
20	chr8:66647600-66660600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:66647600-66662000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr8:66647600-66670800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:66647600-66673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:66648000-66668000	Weak transcription	Liver	Liver
26	chr8:66648600-66668000	Weak transcription	Fetal Brain Female	brain
27	chr8:66649000-66668000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr8:66649600-66683800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr8:66650000-66671400	Weak transcription	Right Ventricle	heart
31	chr8:66651000-66671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:66651000-66673600	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:66651000-66676600	Weak transcription	Fetal Lung	lung
34	chr8:66651200-66673600	Weak transcription	Placenta	Placenta
35	chr8:66651400-66673800	Weak transcription	NHLF	lung
36	chr8:66651600-66657400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr8:66651600-66658400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:66651600-66659400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:66651600-66662800	Weak transcription	Ovary	ovary
40	chr8:66651600-66662800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr8:66651600-66663200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr8:66651600-66671000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr8:66651600-66671000	Weak transcription	Fetal Stomach	stomach
44	chr8:66651600-66671200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:66651600-66672800	Weak transcription	Hela-S3	cervix
46	chr8:66651600-66673000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr8:66651600-66679400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr8:66651600-66690200	Weak transcription	NH-A	brain
49	chr8:66651800-66657200	Weak transcription	NHEK	skin
50	chr8:66651800-66657400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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