Variant report

Variant	rs11991758
Chromosome Location	chr8:66670270-66670271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10088623	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10096256	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10216810	0.91[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.91[ASN][1000 genomes]
rs10808747	0.81[ASN][1000 genomes]
rs1122353	0.92[ASN][1000 genomes]
rs1122354	0.89[ASN][1000 genomes]
rs11990855	0.83[GIH][hapmap];0.80[MEX][hapmap]
rs12542226	0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.91[ASN][1000 genomes]
rs12677891	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12678193	0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12678467	0.85[GIH][hapmap];0.81[MEX][hapmap]
rs12680705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1473601	0.83[GIH][hapmap];0.81[MEX][hapmap]
rs16932340	0.92[YRI][hapmap]
rs17304935	0.86[YRI][hapmap]
rs1877641	0.95[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs28576524	0.85[GIH][hapmap];0.80[MEX][hapmap]
rs4236944	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58130108	0.81[ASN][1000 genomes]
rs60589458	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7016472	0.83[GIH][hapmap];0.81[MEX][hapmap]
rs953593	0.81[GIH][hapmap]
rs999305	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11991758	MTFR1	cis	parietal	SCAN

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:66635200-66674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:66635400-66673600	Weak transcription	Brain Substantia Nigra	brain
4	chr8:66635400-66673800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:66635400-66674000	Weak transcription	Fetal Brain Male	brain
6	chr8:66645600-66686000	Weak transcription	HSMM	muscle
7	chr8:66647600-66670800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:66647600-66673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:66649600-66683800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:66650000-66671400	Weak transcription	Right Ventricle	heart
13	chr8:66651000-66671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:66651000-66673600	Weak transcription	Brain Hippocampus Middle	brain
15	chr8:66651000-66676600	Weak transcription	Fetal Lung	lung
16	chr8:66651200-66673600	Weak transcription	Placenta	Placenta
17	chr8:66651400-66673800	Weak transcription	NHLF	lung
18	chr8:66651600-66671000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:66651600-66671000	Weak transcription	Fetal Stomach	stomach
20	chr8:66651600-66671200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:66651600-66672800	Weak transcription	Hela-S3	cervix
22	chr8:66651600-66673000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:66651600-66679400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:66651600-66690200	Weak transcription	NH-A	brain
25	chr8:66651800-66673800	Weak transcription	A549	lung
26	chr8:66654600-66690200	Weak transcription	Lung	lung
27	chr8:66655800-66671600	Weak transcription	Esophagus	oesophagus
28	chr8:66655800-66674000	Weak transcription	Aorta	Aorta
29	chr8:66656400-66687800	Weak transcription	Pancreas	Pancrea
30	chr8:66657000-66671000	Weak transcription	Right Atrium	heart
31	chr8:66657000-66685000	Weak transcription	Fetal Intestine Large	intestine
32	chr8:66657600-66670400	Weak transcription	Fetal Muscle Leg	muscle
33	chr8:66658600-66686000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr8:66658600-66687800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr8:66659800-66670600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:66659800-66673000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:66659800-66674400	Weak transcription	NHEK	skin
38	chr8:66659800-66687400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:66660000-66670400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr8:66660000-66670800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:66660000-66673800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr8:66660000-66673800	Weak transcription	HMEC	breast
43	chr8:66660000-66679400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:66660200-66671000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:66660400-66671400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr8:66660400-66681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr8:66661400-66670800	Weak transcription	Gastric	stomach
48	chr8:66662800-66690200	Weak transcription	HepG2	liver
49	chr8:66664600-66674000	Weak transcription	Osteobl	bone
50	chr8:66664800-66670400	Weak transcription	K562	blood

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