Variant report

Variant	rs12678193
Chromosome Location	chr8:66673168-66673169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66673165..66677231-chr8:66944474..66948432,4	MCF-7	breast:
2	chr8:66665862..66667938-chr8:66670976..66673867,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10088623	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10096256	0.85[ASN][1000 genomes]
rs10216810	0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1122353	0.93[ASN][1000 genomes]
rs1122354	0.90[ASN][1000 genomes]
rs11991758	0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12542226	0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12677891	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12680705	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1877641	0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4236944	0.86[ASN][1000 genomes]
rs60589458	0.85[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66635200-66674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:66635400-66673600	Weak transcription	Brain Substantia Nigra	brain
3	chr8:66635400-66673800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:66635400-66674000	Weak transcription	Fetal Brain Male	brain
5	chr8:66645600-66686000	Weak transcription	HSMM	muscle
6	chr8:66647600-66673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:66649600-66683800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:66651000-66673600	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:66651000-66676600	Weak transcription	Fetal Lung	lung
12	chr8:66651200-66673600	Weak transcription	Placenta	Placenta
13	chr8:66651400-66673800	Weak transcription	NHLF	lung
14	chr8:66651600-66679400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr8:66651600-66690200	Weak transcription	NH-A	brain
16	chr8:66651800-66673800	Weak transcription	A549	lung
17	chr8:66654600-66690200	Weak transcription	Lung	lung
18	chr8:66655800-66674000	Weak transcription	Aorta	Aorta
19	chr8:66656400-66687800	Weak transcription	Pancreas	Pancrea
20	chr8:66657000-66685000	Weak transcription	Fetal Intestine Large	intestine
21	chr8:66658600-66686000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:66658600-66687800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:66659800-66674400	Weak transcription	NHEK	skin
24	chr8:66659800-66687400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr8:66660000-66673800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:66660000-66673800	Weak transcription	HMEC	breast
27	chr8:66660000-66679400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr8:66660400-66681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:66662800-66690200	Weak transcription	HepG2	liver
30	chr8:66664600-66674000	Weak transcription	Osteobl	bone
31	chr8:66665400-66687800	Strong transcription	Fetal Thymus	thymus
32	chr8:66666600-66674000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr8:66667400-66687800	Strong transcription	Dnd41	blood
34	chr8:66667800-66673800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr8:66668200-66682600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr8:66668200-66686200	Weak transcription	Liver	Liver
37	chr8:66668400-66680000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:66668600-66673600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:66668600-66685600	Weak transcription	Adipose Nuclei	Adipose
40	chr8:66668800-66674000	Strong transcription	Primary T cells from cord blood	blood
41	chr8:66669000-66679800	Weak transcription	Spleen	Spleen
42	chr8:66669200-66673200	Strong transcription	Thymus	Thymus
43	chr8:66669200-66673800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr8:66669400-66674200	Strong transcription	Primary B cells from cord blood	blood
45	chr8:66669400-66687800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr8:66669600-66674200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:66669600-66674600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:66670200-66678400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
49	chr8:66670800-66673200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:66670800-66687400	Weak transcription	Brain Germinal Matrix	brain

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