Variant report

Variant	rs7011464
Chromosome Location	chr8:66635287-66635288
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:66634266-66635721	K562	blood:	n/a	n/a
2	POLR2A	chr8:66634748-66635388	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr8:66635116-66635301	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr8:66634923-66635298	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr8:66634886-66635376	PFSK-1	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:66634454..66636927-chr8:66637677..66640769,3	K562	blood:
2	chr8:66631641..66633524-chr8:66633808..66636306,2	K562	blood:
3	chr8:66634318..66636259-chr8:66648468..66650206,2	K562	blood:
4	chr8:66628174..66631200-chr8:66633706..66636943,3	K562	blood:
5	chr8:66629100..66631894-chr8:66634676..66636367,2	K562	blood:
6	chr8:66634454..66636931-chr8:66637677..66639411,3	K562	blood:

No data

Variant related genes	Relation type
MTFR1	TF binding region
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10087361	0.88[CHB][hapmap]
rs10092109	0.91[CHB][hapmap]
rs1022252	0.81[ASN][1000 genomes]
rs1053085	0.88[CHB][hapmap]
rs1053087	0.87[CHB][hapmap]
rs1053088	0.83[CHB][hapmap]
rs11775485	0.84[ASN][1000 genomes]
rs11985628	0.88[CHB][hapmap]
rs11990855	0.87[CHB][hapmap]
rs12678467	0.91[CHB][hapmap]
rs13266834	0.88[CHB][hapmap]
rs13268343	0.92[CHB][hapmap]
rs13275168	0.80[YRI][hapmap]
rs14213	0.87[CHB][hapmap]
rs1473601	0.87[CHB][hapmap]
rs1533285	0.87[CHB][hapmap]
rs2048648	0.84[ASN][1000 genomes]
rs2048650	0.87[CHB][hapmap]
rs28576524	0.91[CHB][hapmap]
rs3765205	0.88[CHB][hapmap]
rs3812412	0.87[CHB][hapmap]
rs4275254	0.87[CHB][hapmap]
rs4737222	0.88[CHB][hapmap]
rs4737747	0.88[CHB][hapmap]
rs4737748	0.88[CHB][hapmap]
rs4737750	0.88[CHB][hapmap]
rs6985932	0.88[CHB][hapmap]
rs6997959	0.88[CHB][hapmap]
rs7012578	0.88[CHB][hapmap]
rs7016472	0.87[CHB][hapmap]
rs7814841	0.88[CHB][hapmap]
rs7823840	0.87[CHB][hapmap]
rs7833031	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7835313	0.87[CHB][hapmap]
rs7836349	0.87[CHB][hapmap]
rs869151	0.83[YRI][hapmap]
rs953593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv395879	chr8:66631732-66635776	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7011464	MTFR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
4	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:66620800-66648800	Weak transcription	Psoas Muscle	Psoas
6	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:66626200-66652000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
11	chr8:66626400-66656600	Strong transcription	Primary T cells from cord blood	blood
12	chr8:66626600-66640400	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:66626600-66653600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr8:66626600-66655600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr8:66627200-66640400	Strong transcription	Left Ventricle	heart
16	chr8:66627200-66655000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:66627400-66637600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:66627400-66640400	Strong transcription	Thymus	Thymus
19	chr8:66628000-66652000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr8:66628200-66636400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:66628200-66640800	Strong transcription	Primary hematopoietic stem cells	blood
22	chr8:66628200-66660000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:66628200-66660200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:66628400-66635400	Strong transcription	Adipose Nuclei	Adipose
25	chr8:66628400-66635400	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:66628400-66635600	Strong transcription	Brain Germinal Matrix	brain
27	chr8:66628400-66636600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:66628400-66636600	Strong transcription	Fetal Brain Female	brain
29	chr8:66628400-66637200	Strong transcription	GM12878-XiMat	blood
30	chr8:66628400-66637800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr8:66628400-66638000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr8:66628400-66638000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr8:66628400-66638000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr8:66628400-66640000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
35	chr8:66628400-66650200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr8:66628400-66651600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr8:66628400-66652400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr8:66628400-66652800	Strong transcription	Primary B cells from cord blood	blood
39	chr8:66628400-66663800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr8:66628400-66666600	Strong transcription	Dnd41	blood
41	chr8:66628800-66637000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:66630000-66638400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr8:66630200-66635400	Strong transcription	Right Ventricle	heart
44	chr8:66630200-66635600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr8:66630200-66635800	Strong transcription	Fetal Muscle Leg	muscle
46	chr8:66630400-66635400	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:66630400-66635400	Strong transcription	Spleen	Spleen
48	chr8:66630400-66637800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr8:66630400-66639400	Strong transcription	Liver	Liver
50	chr8:66630600-66635400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links