Variant report

Variant	rs869151
Chromosome Location	chr8:66638722-66638723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66634454..66636931-chr8:66637677..66639411,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10091345	0.84[EUR][1000 genomes]
rs10106749	0.92[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs10111844	0.97[EUR][1000 genomes]
rs10957358	0.92[CEU][hapmap]
rs13251307	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs13264710	0.81[AFR][1000 genomes]
rs13274205	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13275168	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13280521	0.92[CEU][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs13281090	0.96[CEU][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs13281981	0.92[CEU][hapmap]
rs17395275	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs17396080	0.92[CEU][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes]
rs2357475	0.81[EUR][1000 genomes]
rs34496943	0.95[EUR][1000 genomes]
rs35411381	0.95[EUR][1000 genomes]
rs4424306	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs62507608	0.95[EUR][1000 genomes]
rs6472219	0.92[CEU][hapmap];0.80[YRI][hapmap];0.84[EUR][1000 genomes]
rs7007473	0.85[EUR][1000 genomes]
rs7007987	0.92[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs7011464	0.83[YRI][hapmap]
rs7818909	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7822627	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7822707	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7829434	0.92[CEU][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs7833031	0.87[LWK][hapmap];0.80[YRI][hapmap]
rs953593	0.83[YRI][hapmap]
rs9650151	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv395858	chr8:66637156-66639108	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv395821	chr8:66637160-66639112	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs869151	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
4	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:66620800-66648800	Weak transcription	Psoas Muscle	Psoas
6	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:66626200-66652000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
11	chr8:66626400-66656600	Strong transcription	Primary T cells from cord blood	blood
12	chr8:66626600-66640400	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:66626600-66653600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr8:66626600-66655600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr8:66627200-66640400	Strong transcription	Left Ventricle	heart
16	chr8:66627200-66655000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:66627400-66640400	Strong transcription	Thymus	Thymus
18	chr8:66628000-66652000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr8:66628200-66640800	Strong transcription	Primary hematopoietic stem cells	blood
20	chr8:66628200-66660000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:66628200-66660200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:66628400-66640000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
23	chr8:66628400-66650200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr8:66628400-66651600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr8:66628400-66652400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:66628400-66652800	Strong transcription	Primary B cells from cord blood	blood
27	chr8:66628400-66663800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr8:66628400-66666600	Strong transcription	Dnd41	blood
29	chr8:66630400-66639400	Strong transcription	Liver	Liver
30	chr8:66630600-66646600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:66631000-66640000	Strong transcription	Duodenum Mucosa	Duodenum
32	chr8:66631000-66644600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:66631200-66641000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:66631200-66644600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr8:66631400-66647600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr8:66631600-66639800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:66631600-66644400	Weak transcription	Stomach Mucosa	stomach
38	chr8:66632000-66640400	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:66633800-66653800	Weak transcription	K562	blood
40	chr8:66634800-66642000	Weak transcription	Aorta	Aorta
41	chr8:66635000-66648800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr8:66635200-66643200	Weak transcription	Osteobl	bone
43	chr8:66635200-66645200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr8:66635200-66645800	Weak transcription	Brain Angular Gyrus	brain
45	chr8:66635200-66646200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr8:66635200-66646400	Weak transcription	Brain Anterior Caudate	brain
47	chr8:66635200-66674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr8:66635400-66639000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr8:66635400-66639000	Weak transcription	Right Ventricle	heart
50	chr8:66635400-66639400	Weak transcription	NHEK	skin

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