Variant report

Variant	rs9650151
Chromosome Location	chr8:66628852-66628853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:66628364-66629197	GM12878	blood:	n/a	n/a
2	POLR2A	chr8:66628675-66628875	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr8:66628232-66632311	K562	blood:	n/a	n/a
4	POLR2A	chr8:66628388-66631684	GM12891	blood:	n/a	n/a
5	POLR2A	chr8:66628395-66628899	PFSK-1	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:6797319..6800099-chr8:66628755..66630552,2	MCF-7	breast:
2	chr8:66628832..66631353-chr8:66639914..66641880,2	K562	blood:
3	chr8:66546894..66548678-chr8:66628274..66630820,2	MCF-7	breast:
4	chr8:66623079..66625512-chr8:66628550..66631317,2	K562	blood:
5	chr8:66628174..66631200-chr8:66633706..66636943,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272155	TF binding region
ENSG00000126746	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10106749	1.00[CHD][hapmap]
rs10957358	1.00[YRI][hapmap]
rs11774586	1.00[YRI][hapmap]
rs13259357	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13274205	1.00[CHD][hapmap];0.81[TSI][hapmap]
rs13275168	1.00[CHD][hapmap];0.81[TSI][hapmap]
rs13280521	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap]
rs13281090	0.82[ASW][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap]
rs13281981	1.00[YRI][hapmap]
rs17395275	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs62507608	0.82[AFR][1000 genomes]
rs7007987	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7829434	1.00[CHD][hapmap];0.81[TSI][hapmap]
rs869151	1.00[CHD][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9650151	CTD-3025N20.3	cis	Thyroid	GTEx
rs9650151	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
2	chr8:66593800-66630000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:66599200-66633000	Weak transcription	Fetal Kidney	kidney
4	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
7	chr8:66611600-66634600	Weak transcription	Fetal Brain Male	brain
8	chr8:66612000-66629000	Weak transcription	Pancreas	Pancrea
9	chr8:66613400-66634600	Weak transcription	Colonic Mucosa	Colon
10	chr8:66616000-66630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:66616600-66629800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:66617600-66629000	Weak transcription	Fetal Intestine Small	intestine
13	chr8:66617600-66630400	Weak transcription	Gastric	stomach
14	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:66617800-66630600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:66618000-66629000	Weak transcription	Esophagus	oesophagus
17	chr8:66618600-66630400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:66620200-66632000	Weak transcription	Brain Anterior Caudate	brain
19	chr8:66620200-66632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:66620400-66629600	Weak transcription	HSMMtube	muscle
21	chr8:66620400-66630600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:66620400-66630800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:66620400-66630800	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:66620400-66631400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:66620400-66631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:66620600-66629000	Weak transcription	HSMM	muscle
27	chr8:66620800-66630200	Weak transcription	Right Ventricle	heart
28	chr8:66620800-66631200	Weak transcription	Placenta	Placenta
29	chr8:66620800-66632600	Weak transcription	Lung	lung
30	chr8:66620800-66633000	Weak transcription	Brain Angular Gyrus	brain
31	chr8:66620800-66648800	Weak transcription	Psoas Muscle	Psoas
32	chr8:66621000-66630200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:66621000-66630400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr8:66621000-66631600	Weak transcription	Aorta	Aorta
35	chr8:66621000-66632600	Weak transcription	Brain Substantia Nigra	brain
36	chr8:66621000-66634800	Weak transcription	Ovary	ovary
37	chr8:66621400-66629000	Weak transcription	HepG2	liver
38	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
39	chr8:66623000-66629400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:66625400-66629000	Weak transcription	K562	blood
42	chr8:66625600-66629000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:66626200-66633800	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr8:66626200-66652000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
47	chr8:66626400-66656600	Strong transcription	Primary T cells from cord blood	blood
48	chr8:66626600-66629200	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr8:66626600-66629400	Strong transcription	Fetal Muscle Leg	muscle
50	chr8:66626600-66640400	Strong transcription	Primary T helper cells PMA-I stimulated	--

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