Variant report

Variant	rs13274205
Chromosome Location	chr8:66620359-66620360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66555940..66558809-chr8:66619620..66621771,2	K562	blood:
2	chr8:66555236..66558809-chr8:66619620..66621771,3	K562	blood:

Variant related genes	Relation type
ENSG00000066855	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10091345	0.85[EUR][1000 genomes]
rs10106749	0.96[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs10111844	0.98[EUR][1000 genomes]
rs10957358	0.96[CEU][hapmap]
rs13251307	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13264710	0.80[AMR][1000 genomes]
rs13275168	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13280521	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs13281090	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13281981	0.96[CEU][hapmap]
rs17395275	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17396080	0.96[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2357475	0.83[EUR][1000 genomes]
rs34496943	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35411381	0.97[EUR][1000 genomes]
rs4424306	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62507608	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472219	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7003577	0.96[YRI][hapmap]
rs7007473	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7007987	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7818909	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7822627	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7822707	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7829434	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs869151	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9650151	1.00[CHD][hapmap];0.81[TSI][hapmap]
rs966486	0.81[LWK][hapmap];0.96[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13274205	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
3	chr8:66584800-66628600	Weak transcription	NHLF	lung
4	chr8:66587800-66628000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:66593400-66628400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:66593800-66630000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:66597600-66628600	Weak transcription	Small Intestine	intestine
8	chr8:66599200-66633000	Weak transcription	Fetal Kidney	kidney
9	chr8:66602000-66627400	Weak transcription	Thymus	Thymus
10	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:66605600-66628400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
14	chr8:66607000-66627200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:66607200-66626600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:66607400-66626600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr8:66611600-66634600	Weak transcription	Fetal Brain Male	brain
18	chr8:66612000-66629000	Weak transcription	Pancreas	Pancrea
19	chr8:66613400-66634600	Weak transcription	Colonic Mucosa	Colon
20	chr8:66615400-66623000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:66615600-66622400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr8:66616000-66628600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:66616000-66630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr8:66616200-66628400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:66616600-66621200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:66616600-66621600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:66616600-66622000	Strong transcription	Dnd41	blood
28	chr8:66616600-66622200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:66616600-66622200	Strong transcription	K562	blood
30	chr8:66616600-66629800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr8:66616800-66620800	Strong transcription	Placenta	Placenta
32	chr8:66616800-66621800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:66616800-66622000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:66616800-66622000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr8:66617000-66621400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr8:66617000-66628400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr8:66617400-66622000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr8:66617600-66621400	Strong transcription	GM12878-XiMat	blood
39	chr8:66617600-66626000	Weak transcription	Fetal Stomach	stomach
40	chr8:66617600-66629000	Weak transcription	Fetal Intestine Small	intestine
41	chr8:66617600-66630400	Weak transcription	Gastric	stomach
42	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr8:66617800-66621400	Strong transcription	NHDF-Ad	bronchial
44	chr8:66617800-66630600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr8:66618000-66629000	Weak transcription	Esophagus	oesophagus
46	chr8:66618400-66626800	Strong transcription	Liver	Liver
47	chr8:66618400-66628400	Weak transcription	Stomach Mucosa	stomach
48	chr8:66618600-66622000	Strong transcription	Osteobl	bone
49	chr8:66618600-66630400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr8:66618800-66625000	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links