Variant report

Variant	rs13251307
Chromosome Location	chr8:66577146-66577147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66556290..66558144-chr8:66575410..66578096,2	MCF-7	breast:
2	chr8:66576189..66579076-chr8:66585029..66587189,2	K562	blood:
3	chr8:66560991..66563000-chr8:66576545..66578819,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066855	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10102573	0.94[YRI][hapmap]
rs10105283	0.94[YRI][hapmap]
rs10106749	0.96[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10111844	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10957358	0.96[CEU][hapmap]
rs13274205	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13275168	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13280521	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs13281090	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13281981	0.96[CEU][hapmap]
rs17395275	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17396080	0.96[CEU][hapmap]
rs34496943	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35411381	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4424306	0.96[CEU][hapmap]
rs62507608	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6472219	0.96[CEU][hapmap]
rs7007987	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7818909	0.96[CEU][hapmap]
rs7822627	0.88[EUR][1000 genomes]
rs7822707	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs7829434	0.96[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs869151	0.96[CEU][hapmap];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13251307	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66558000-66582400	Weak transcription	Placenta	Placenta
2	chr8:66558000-66583400	Weak transcription	Aorta	Aorta
3	chr8:66558000-66585200	Weak transcription	Left Ventricle	heart
4	chr8:66558400-66606800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr8:66567200-66616800	Weak transcription	Gastric	stomach
6	chr8:66571400-66590800	Weak transcription	Stomach Mucosa	stomach
7	chr8:66571400-66605800	Weak transcription	Primary T cells from cord blood	blood
8	chr8:66571400-66606600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr8:66571800-66616800	Weak transcription	Esophagus	oesophagus
10	chr8:66571800-66619600	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:66572000-66579800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:66572000-66581200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:66572000-66583000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:66572000-66583600	Weak transcription	Liver	Liver
15	chr8:66572000-66584000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr8:66572000-66584000	Weak transcription	HepG2	liver
17	chr8:66572000-66585200	Weak transcription	HSMM	muscle
18	chr8:66572000-66585600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:66572000-66594400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:66572000-66595200	Weak transcription	HSMMtube	muscle
21	chr8:66572000-66595800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:66572000-66605800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:66572000-66606800	Weak transcription	HUVEC	blood vessel
24	chr8:66572000-66607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:66572000-66607000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:66572000-66609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:66572000-66611400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:66572000-66612800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr8:66572000-66616600	Weak transcription	HMEC	breast
30	chr8:66572000-66617000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:66572000-66617600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:66572000-66617800	Weak transcription	NHDF-Ad	bronchial
33	chr8:66572000-66619600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr8:66572000-66619600	Weak transcription	NHEK	skin
35	chr8:66572000-66619800	Weak transcription	Lung	lung
36	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr8:66572200-66580000	Weak transcription	K562	blood
38	chr8:66572200-66585200	Weak transcription	Primary B cells from cord blood	blood
39	chr8:66572200-66592000	Weak transcription	Hela-S3	cervix
40	chr8:66572200-66619800	Weak transcription	A549	lung
41	chr8:66572400-66595000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:66573000-66579000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:66573200-66583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr8:66573600-66584000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr8:66573600-66585200	Weak transcription	Dnd41	blood
46	chr8:66573800-66579200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:66573800-66583000	Weak transcription	Fetal Stomach	stomach
48	chr8:66573800-66583400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr8:66573800-66595800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:66573800-66615200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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