Variant report

Variant	rs7822707
Chromosome Location	chr8:66667850-66667851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66665862..66667938-chr8:66670976..66673867,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10106749	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs10111844	0.89[EUR][1000 genomes]
rs10957358	0.93[CEU][hapmap]
rs13251307	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs13251608	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13274205	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs13275168	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs13280521	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13281090	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13281981	0.93[CEU][hapmap]
rs17395275	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs17396080	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34496943	0.88[EUR][1000 genomes]
rs35411381	0.90[EUR][1000 genomes]
rs4424306	0.93[CEU][hapmap]
rs62507608	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6472219	0.93[CEU][hapmap]
rs7007987	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7818909	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7822627	0.89[EUR][1000 genomes]
rs7829434	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs869151	0.92[CEU][hapmap];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7822707	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:66635200-66674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:66635400-66673600	Weak transcription	Brain Substantia Nigra	brain
4	chr8:66635400-66673800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:66635400-66674000	Weak transcription	Fetal Brain Male	brain
6	chr8:66645600-66686000	Weak transcription	HSMM	muscle
7	chr8:66646800-66670200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:66647600-66670800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:66647600-66673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:66648000-66668000	Weak transcription	Liver	Liver
12	chr8:66648600-66668000	Weak transcription	Fetal Brain Female	brain
13	chr8:66649000-66668000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr8:66649600-66683800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:66650000-66671400	Weak transcription	Right Ventricle	heart
17	chr8:66651000-66671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:66651000-66673600	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:66651000-66676600	Weak transcription	Fetal Lung	lung
20	chr8:66651200-66673600	Weak transcription	Placenta	Placenta
21	chr8:66651400-66673800	Weak transcription	NHLF	lung
22	chr8:66651600-66671000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:66651600-66671000	Weak transcription	Fetal Stomach	stomach
24	chr8:66651600-66671200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:66651600-66672800	Weak transcription	Hela-S3	cervix
26	chr8:66651600-66673000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr8:66651600-66679400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr8:66651600-66690200	Weak transcription	NH-A	brain
29	chr8:66651800-66668000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:66651800-66668000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:66651800-66673800	Weak transcription	A549	lung
32	chr8:66654600-66690200	Weak transcription	Lung	lung
33	chr8:66654800-66668000	Weak transcription	Psoas Muscle	Psoas
34	chr8:66655800-66671600	Weak transcription	Esophagus	oesophagus
35	chr8:66655800-66674000	Weak transcription	Aorta	Aorta
36	chr8:66656400-66687800	Weak transcription	Pancreas	Pancrea
37	chr8:66657000-66671000	Weak transcription	Right Atrium	heart
38	chr8:66657000-66685000	Weak transcription	Fetal Intestine Large	intestine
39	chr8:66657600-66670400	Weak transcription	Fetal Muscle Leg	muscle
40	chr8:66658400-66669200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr8:66658600-66669200	Weak transcription	Thymus	Thymus
42	chr8:66658600-66686000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr8:66658600-66687800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr8:66659800-66670600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:66659800-66673000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:66659800-66674400	Weak transcription	NHEK	skin
47	chr8:66659800-66687400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr8:66660000-66668200	Weak transcription	Adipose Nuclei	Adipose
49	chr8:66660000-66670400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr8:66660000-66670800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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