Variant report

Variant	rs7829434
Chromosome Location	chr8:66629144-66629145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:66628364-66629197	GM12878	blood:	n/a	n/a
2	POLR2A	chr8:66629092-66629158	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr8:66629039-66629179	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr8:66628232-66632311	K562	blood:	n/a	n/a
5	POLR2A	chr8:66628902-66629331	GM12892	blood:	n/a	n/a
6	POLR2A	chr8:66628388-66631684	GM12891	blood:	n/a	n/a
7	BCL3	chr8:66628973-66630130	A549	lung:	n/a	chr8:66629774-66629783

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:6797319..6800099-chr8:66628755..66630552,2	MCF-7	breast:
2	chr8:66628832..66631353-chr8:66639914..66641880,2	K562	blood:
3	chr8:66546894..66548678-chr8:66628274..66630820,2	MCF-7	breast:
4	chr8:66629100..66631894-chr8:66634676..66636367,2	K562	blood:
5	chr8:66623079..66625512-chr8:66628550..66631317,2	K562	blood:
6	chr8:66628174..66631200-chr8:66633706..66636943,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272155	TF binding region
ENSG00000126746	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10091345	0.86[EUR][1000 genomes]
rs10102573	0.89[YRI][hapmap]
rs10105283	0.89[YRI][hapmap]
rs10106749	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10111844	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10957358	0.92[CEU][hapmap]
rs13251307	0.96[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13274205	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs13275168	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13280521	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13281090	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13281981	0.92[CEU][hapmap]
rs17395275	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17396080	0.92[CEU][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs2357475	0.83[EUR][1000 genomes]
rs34496943	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35411381	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4424306	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs62507608	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472219	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7007473	0.87[EUR][1000 genomes]
rs7007987	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7818909	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7822627	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7822707	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs869151	0.92[CEU][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs9650151	1.00[CHD][hapmap];0.81[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7829434	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
2	chr8:66593800-66630000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:66599200-66633000	Weak transcription	Fetal Kidney	kidney
4	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
7	chr8:66611600-66634600	Weak transcription	Fetal Brain Male	brain
8	chr8:66613400-66634600	Weak transcription	Colonic Mucosa	Colon
9	chr8:66616000-66630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:66616600-66629800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:66617600-66630400	Weak transcription	Gastric	stomach
12	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:66617800-66630600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:66618600-66630400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:66620200-66632000	Weak transcription	Brain Anterior Caudate	brain
16	chr8:66620200-66632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:66620400-66629600	Weak transcription	HSMMtube	muscle
18	chr8:66620400-66630600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr8:66620400-66630800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:66620400-66630800	Weak transcription	Brain Hippocampus Middle	brain
21	chr8:66620400-66631400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:66620400-66631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:66620800-66630200	Weak transcription	Right Ventricle	heart
24	chr8:66620800-66631200	Weak transcription	Placenta	Placenta
25	chr8:66620800-66632600	Weak transcription	Lung	lung
26	chr8:66620800-66633000	Weak transcription	Brain Angular Gyrus	brain
27	chr8:66620800-66648800	Weak transcription	Psoas Muscle	Psoas
28	chr8:66621000-66630200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr8:66621000-66630400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr8:66621000-66631600	Weak transcription	Aorta	Aorta
31	chr8:66621000-66632600	Weak transcription	Brain Substantia Nigra	brain
32	chr8:66621000-66634800	Weak transcription	Ovary	ovary
33	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
34	chr8:66623000-66629400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr8:66626200-66633800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr8:66626200-66652000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
40	chr8:66626400-66656600	Strong transcription	Primary T cells from cord blood	blood
41	chr8:66626600-66629200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:66626600-66629400	Strong transcription	Fetal Muscle Leg	muscle
43	chr8:66626600-66640400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr8:66626600-66653600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr8:66626600-66655600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr8:66627200-66640400	Strong transcription	Left Ventricle	heart
47	chr8:66627200-66655000	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr8:66627400-66629400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr8:66627400-66630800	Weak transcription	Fetal Stomach	stomach
50	chr8:66627400-66637600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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