Variant report

Variant	rs34496943
Chromosome Location	chr8:66589213-66589214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:66589013-66589215	IMR90	lung:	n/a	chr8:66589086-66589097
2	STAT3	chr8:66588974-66589213	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr8:66588875-66589294	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr8:66588997-66589238	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr8:66588949-66589263	H1-neurons	neurons:	n/a	n/a
6	CEBPB	chr8:66588970-66589225	A549	lung:	n/a	chr8:66589086-66589097 chr8:66588991-66589008 chr8:66588994-66589006
7	STAT3	chr8:66588939-66589255	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr8:66589025-66589240	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr8:66588882-66589284	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr8:66588879-66589287	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr8:66588936-66589273	HepG2	liver:	n/a	chr8:66589086-66589097 chr8:66588991-66589008 chr8:66588994-66589006

Variant related genes	Relation type
MTFR1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10091345	0.85[EUR][1000 genomes]
rs10106749	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10111844	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13251307	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13274205	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13275168	0.98[EUR][1000 genomes]
rs13280521	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13281090	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17395275	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17396080	0.85[EUR][1000 genomes]
rs2357475	0.83[EUR][1000 genomes]
rs35411381	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4424306	0.87[EUR][1000 genomes]
rs62507608	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6472219	0.87[EUR][1000 genomes]
rs7007473	0.87[EUR][1000 genomes]
rs7007987	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7818909	0.87[EUR][1000 genomes]
rs7822627	0.96[EUR][1000 genomes]
rs7822707	0.88[EUR][1000 genomes]
rs7829434	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs869151	0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34496943	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66558400-66606800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr8:66567200-66616800	Weak transcription	Gastric	stomach
3	chr8:66571400-66590800	Weak transcription	Stomach Mucosa	stomach
4	chr8:66571400-66605800	Weak transcription	Primary T cells from cord blood	blood
5	chr8:66571400-66606600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:66571800-66616800	Weak transcription	Esophagus	oesophagus
7	chr8:66571800-66619600	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:66572000-66594400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:66572000-66595200	Weak transcription	HSMMtube	muscle
10	chr8:66572000-66595800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:66572000-66605800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:66572000-66606800	Weak transcription	HUVEC	blood vessel
13	chr8:66572000-66607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:66572000-66607000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:66572000-66609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:66572000-66611400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:66572000-66612800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:66572000-66616600	Weak transcription	HMEC	breast
19	chr8:66572000-66617000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:66572000-66617600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:66572000-66617800	Weak transcription	NHDF-Ad	bronchial
22	chr8:66572000-66619600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:66572000-66619600	Weak transcription	NHEK	skin
24	chr8:66572000-66619800	Weak transcription	Lung	lung
25	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr8:66572200-66592000	Weak transcription	Hela-S3	cervix
27	chr8:66572200-66619800	Weak transcription	A549	lung
28	chr8:66572400-66595000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:66573800-66595800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:66573800-66615200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
32	chr8:66574200-66608600	Weak transcription	Fetal Muscle Leg	muscle
33	chr8:66574400-66616800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:66578400-66605800	Weak transcription	Adipose Nuclei	Adipose
35	chr8:66579000-66611200	Weak transcription	Pancreas	Pancrea
36	chr8:66579400-66594600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr8:66579600-66606800	Weak transcription	NH-A	brain
38	chr8:66579600-66607600	Weak transcription	Fetal Intestine Large	intestine
39	chr8:66579800-66596000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:66580000-66619600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:66580400-66618600	Weak transcription	Osteobl	bone
42	chr8:66580400-66619800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr8:66580600-66619400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr8:66581000-66594800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr8:66581000-66603000	Weak transcription	K562	blood
46	chr8:66581000-66609600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr8:66581000-66619600	Weak transcription	Fetal Lung	lung
48	chr8:66581200-66594000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr8:66581200-66619400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr8:66581400-66589800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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