Variant report

Variant	rs10091345
Chromosome Location	chr8:66552315-66552316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10106749	0.84[EUR][1000 genomes]
rs10111844	0.87[EUR][1000 genomes]
rs10957358	0.82[EUR][1000 genomes]
rs10957359	0.83[EUR][1000 genomes]
rs13274205	0.85[EUR][1000 genomes]
rs13275168	0.87[EUR][1000 genomes]
rs13281090	0.86[EUR][1000 genomes]
rs13281981	0.88[EUR][1000 genomes]
rs17395275	0.84[EUR][1000 genomes]
rs2357475	0.94[EUR][1000 genomes]
rs34496943	0.85[EUR][1000 genomes]
rs35411381	0.83[EUR][1000 genomes]
rs4424306	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62507608	0.85[EUR][1000 genomes]
rs6472219	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7007473	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7007987	0.81[EUR][1000 genomes]
rs7462352	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7822627	0.85[EUR][1000 genomes]
rs7829434	0.86[EUR][1000 genomes]
rs869151	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10091345	CTD-3025N20.3	cis	Thyroid	GTEx
rs10091345	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66546400-66556000	Weak transcription	Small Intestine	intestine
2	chr8:66547000-66555800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:66547400-66556000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr8:66547800-66555200	Weak transcription	Pancreas	Pancrea
5	chr8:66548800-66555200	Weak transcription	HMEC	breast
6	chr8:66549200-66555400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:66549400-66555600	Weak transcription	Hela-S3	cervix
8	chr8:66549600-66555600	Weak transcription	A549	lung
9	chr8:66549800-66552400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:66551400-66555200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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