Variant report

Variant	rs7462352
Chromosome Location	chr8:66496613-66496614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10091345	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10957358	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10957359	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11786598	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11992528	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13271817	0.86[EUR][1000 genomes]
rs13281981	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13282323	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2357475	0.80[EUR][1000 genomes]
rs28547533	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28709439	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4394432	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4424306	0.84[EUR][1000 genomes]
rs6472219	0.84[EUR][1000 genomes]
rs6994889	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7007473	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7462352	CTD-3025N20.3	cis	Artery Tibial	GTEx
rs7462352	CTD-3025N20.3	cis	Esophagus Muscularis	GTEx
rs7462352	CTD-3025N20.3	cis	Thyroid	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66491400-66505800	Weak transcription	Fetal Stomach	stomach
2	chr8:66491800-66512000	Weak transcription	Spleen	Spleen
3	chr8:66492000-66521000	Weak transcription	Lung	lung
4	chr8:66495800-66516600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:66496200-66499200	Enhancers	Brain Angular Gyrus	brain
6	chr8:66496400-66496800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:66496400-66499400	Enhancers	Brain Hippocampus Middle	brain
8	chr8:66496400-66499400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr8:66496600-66499400	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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