Variant report

Variant	rs11786598
Chromosome Location	chr8:66472179-66472180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10106749	0.85[CEU][hapmap];0.94[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs10957358	0.92[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10957359	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11992528	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13251307	0.89[CEU][hapmap]
rs13271817	0.96[EUR][1000 genomes]
rs13274205	0.89[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap]
rs13275168	0.89[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap]
rs13280521	1.00[ASW][hapmap];0.85[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs13281090	1.00[ASW][hapmap];0.89[CEU][hapmap];0.97[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs13281981	0.92[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13282323	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395275	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs17396080	0.85[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs28547533	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28709439	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4394432	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4424306	0.92[CEU][hapmap];0.81[AMR][1000 genomes]
rs6472219	0.92[CEU][hapmap]
rs6991838	0.88[EUR][1000 genomes]
rs6994889	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7007473	0.81[AMR][1000 genomes]
rs7007987	1.00[ASW][hapmap];0.85[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs7462352	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7818909	0.85[CEU][hapmap]
rs7822707	0.85[CEU][hapmap]
rs7829434	0.85[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs869151	0.85[CEU][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs9650151	0.82[ASW][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11786598	ARMC1	cis	lymphoblastoid	seeQTL
rs11786598	MTFR1	cis	multi-tissue	Pritchard
rs11786598	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66468600-66472400	Weak transcription	Fetal Brain Female	brain
2	chr8:66471200-66472400	Weak transcription	Brain Hippocampus Middle	brain

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