Variant report

Variant	rs13281981
Chromosome Location	chr8:66523884-66523885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10091345	0.88[EUR][1000 genomes]
rs10106749	0.92[CEU][hapmap]
rs10957358	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10957359	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11774586	1.00[YRI][hapmap]
rs11786598	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11992528	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13251307	0.96[CEU][hapmap]
rs13271817	0.82[EUR][1000 genomes]
rs13274205	0.96[CEU][hapmap]
rs13275168	0.96[CEU][hapmap]
rs13280521	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs13281090	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs13282323	0.81[EUR][1000 genomes]
rs17395275	0.96[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs17396080	0.92[CEU][hapmap]
rs2357475	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28547533	0.81[EUR][1000 genomes]
rs28709439	0.81[EUR][1000 genomes]
rs4394432	0.85[EUR][1000 genomes]
rs4424306	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62507608	0.84[AMR][1000 genomes]
rs6472219	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6994889	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7007473	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7007987	0.92[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs7462352	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7818909	0.93[CEU][hapmap]
rs7822707	0.93[CEU][hapmap]
rs7829434	0.92[CEU][hapmap]
rs869151	0.92[CEU][hapmap]
rs9650151	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13281981	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66500800-66524400	Weak transcription	Psoas Muscle	Psoas
2	chr8:66504000-66545200	Weak transcription	Fetal Brain Male	brain
3	chr8:66506800-66545200	Weak transcription	Stomach Mucosa	stomach
4	chr8:66507800-66538000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:66508000-66545200	Weak transcription	Fetal Heart	heart
6	chr8:66510600-66528200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:66512800-66526400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:66513800-66525600	Strong transcription	Fetal Intestine Large	intestine
9	chr8:66513800-66527800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:66513800-66528000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr8:66513800-66528200	Strong transcription	Fetal Thymus	thymus
12	chr8:66513800-66528400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr8:66514000-66527800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr8:66514000-66528200	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:66514000-66528200	Strong transcription	Adipose Nuclei	Adipose
16	chr8:66514000-66528400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:66514000-66528400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:66514000-66528400	Strong transcription	Placenta	Placenta
19	chr8:66514200-66526800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr8:66514200-66527600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:66514200-66527600	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:66514200-66528000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr8:66514200-66528200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:66514200-66528400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:66514200-66528400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr8:66514200-66528600	Strong transcription	Dnd41	blood
27	chr8:66514200-66528800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:66514200-66528800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:66514400-66527600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:66514600-66539200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr8:66514800-66525800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:66514800-66527600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr8:66514800-66528400	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr8:66514800-66528400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:66514800-66528800	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr8:66515000-66528000	Strong transcription	Primary T cells from cord blood	blood
37	chr8:66515200-66528400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr8:66515400-66527600	Strong transcription	Brain Anterior Caudate	brain
39	chr8:66515600-66528000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr8:66516000-66525600	Strong transcription	Fetal Brain Female	brain
41	chr8:66516200-66527200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr8:66516400-66525800	Strong transcription	Fetal Muscle Leg	muscle
43	chr8:66516400-66528400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:66516400-66528800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr8:66516600-66526200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:66516800-66525400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr8:66517000-66533200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr8:66517000-66538400	Weak transcription	Small Intestine	intestine
49	chr8:66517200-66524200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr8:66517200-66524400	Weak transcription	Gastric	stomach

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