Variant report

Variant	rs62507608
Chromosome Location	chr8:66600465-66600466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10091345	0.85[EUR][1000 genomes]
rs10106749	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10111844	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10957358	0.84[AMR][1000 genomes]
rs10957359	0.82[AMR][1000 genomes]
rs13251307	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13251608	0.82[AMR][1000 genomes]
rs13274205	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13275168	0.98[EUR][1000 genomes]
rs13280521	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13281090	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13281981	0.84[AMR][1000 genomes]
rs17395275	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17396080	0.85[EUR][1000 genomes]
rs2357475	0.83[EUR][1000 genomes]
rs34496943	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35411381	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4424306	0.87[EUR][1000 genomes]
rs6472219	0.87[EUR][1000 genomes]
rs7007473	0.87[EUR][1000 genomes]
rs7007987	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7818909	0.87[EUR][1000 genomes]
rs7822627	0.96[EUR][1000 genomes]
rs7822707	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7829434	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs869151	0.95[EUR][1000 genomes]
rs9650151	0.82[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62507608	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66558400-66606800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr8:66567200-66616800	Weak transcription	Gastric	stomach
3	chr8:66571400-66605800	Weak transcription	Primary T cells from cord blood	blood
4	chr8:66571400-66606600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:66571800-66616800	Weak transcription	Esophagus	oesophagus
6	chr8:66571800-66619600	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:66572000-66605800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:66572000-66606800	Weak transcription	HUVEC	blood vessel
9	chr8:66572000-66607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:66572000-66607000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:66572000-66609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:66572000-66611400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:66572000-66612800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:66572000-66616600	Weak transcription	HMEC	breast
15	chr8:66572000-66617000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:66572000-66617600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:66572000-66617800	Weak transcription	NHDF-Ad	bronchial
18	chr8:66572000-66619600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:66572000-66619600	Weak transcription	NHEK	skin
20	chr8:66572000-66619800	Weak transcription	Lung	lung
21	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr8:66572200-66619800	Weak transcription	A549	lung
23	chr8:66573800-66615200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
25	chr8:66574200-66608600	Weak transcription	Fetal Muscle Leg	muscle
26	chr8:66574400-66616800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:66578400-66605800	Weak transcription	Adipose Nuclei	Adipose
28	chr8:66579000-66611200	Weak transcription	Pancreas	Pancrea
29	chr8:66579600-66606800	Weak transcription	NH-A	brain
30	chr8:66579600-66607600	Weak transcription	Fetal Intestine Large	intestine
31	chr8:66580000-66619600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:66580400-66618600	Weak transcription	Osteobl	bone
33	chr8:66580400-66619800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr8:66580600-66619400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr8:66581000-66603000	Weak transcription	K562	blood
36	chr8:66581000-66609600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr8:66581000-66619600	Weak transcription	Fetal Lung	lung
38	chr8:66581200-66619400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr8:66582000-66606800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr8:66582000-66616800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:66582200-66616800	Weak transcription	Right Ventricle	heart
42	chr8:66582600-66608800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr8:66582800-66606600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr8:66582800-66617800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:66583000-66616800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:66583600-66619800	Weak transcription	Brain Angular Gyrus	brain
47	chr8:66583800-66610800	Weak transcription	Fetal Stomach	stomach
48	chr8:66583800-66619800	Weak transcription	Aorta	Aorta
49	chr8:66584200-66605800	Weak transcription	Placenta	Placenta
50	chr8:66584200-66620000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links