Variant report

Variant	rs35411381
Chromosome Location	chr8:66625436-66625437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66623079..66625512-chr8:66628550..66631317,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10091345	0.83[EUR][1000 genomes]
rs10106749	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10111844	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13251307	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13274205	0.97[EUR][1000 genomes]
rs13275168	0.96[EUR][1000 genomes]
rs13280521	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13281090	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17395275	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17396080	0.87[EUR][1000 genomes]
rs2357475	0.81[EUR][1000 genomes]
rs34496943	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4424306	0.85[EUR][1000 genomes]
rs62507608	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6472219	0.85[EUR][1000 genomes]
rs7007473	0.85[EUR][1000 genomes]
rs7007987	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7818909	0.89[EUR][1000 genomes]
rs7822627	0.96[EUR][1000 genomes]
rs7822707	0.90[EUR][1000 genomes]
rs7829434	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs869151	0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35411381	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
3	chr8:66584800-66628600	Weak transcription	NHLF	lung
4	chr8:66587800-66628000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:66593400-66628400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:66593800-66630000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:66597600-66628600	Weak transcription	Small Intestine	intestine
8	chr8:66599200-66633000	Weak transcription	Fetal Kidney	kidney
9	chr8:66602000-66627400	Weak transcription	Thymus	Thymus
10	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:66605600-66628400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
14	chr8:66607000-66627200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:66607200-66626600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:66607400-66626600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr8:66611600-66634600	Weak transcription	Fetal Brain Male	brain
18	chr8:66612000-66629000	Weak transcription	Pancreas	Pancrea
19	chr8:66613400-66634600	Weak transcription	Colonic Mucosa	Colon
20	chr8:66616000-66628600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:66616000-66630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr8:66616200-66628400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr8:66616600-66629800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr8:66617000-66628400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr8:66617600-66626000	Weak transcription	Fetal Stomach	stomach
26	chr8:66617600-66629000	Weak transcription	Fetal Intestine Small	intestine
27	chr8:66617600-66630400	Weak transcription	Gastric	stomach
28	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:66617800-66630600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr8:66618000-66629000	Weak transcription	Esophagus	oesophagus
31	chr8:66618400-66626800	Strong transcription	Liver	Liver
32	chr8:66618400-66628400	Weak transcription	Stomach Mucosa	stomach
33	chr8:66618600-66630400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr8:66620200-66626600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr8:66620200-66628400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr8:66620200-66632000	Weak transcription	Brain Anterior Caudate	brain
37	chr8:66620200-66632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:66620400-66625800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr8:66620400-66626200	Weak transcription	Primary B cells from cord blood	blood
40	chr8:66620400-66626200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr8:66620400-66626400	Weak transcription	Primary T cells from cord blood	blood
42	chr8:66620400-66626600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:66620400-66626600	Weak transcription	Fetal Lung	lung
44	chr8:66620400-66627400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr8:66620400-66627400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr8:66620400-66628400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr8:66620400-66628400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:66620400-66628400	Weak transcription	NH-A	brain
49	chr8:66620400-66628600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr8:66620400-66628600	Weak transcription	Fetal Intestine Large	intestine

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